RNA id: TU390985


Basic Information

Item Value
RNA id TU390985
length 206
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G330052
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10483329 ~ 10483668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCAAACCAGTCAACAGCTAAAAAATCGCAAAACAACCACTCCATCTGCTATAAGAGAAGAAGTGGTGgaactgcagagagagaggtCCTGCTGgtacagaaagaaaaactgcAGTTAGAGATCAAAAAACtcaagaaggagaaggaaaatcAGGAGATGTACGACATCATTCTAAACAACAAATTTTTGCAGCTACAAATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390976 lncRNA upstream 21599 10413181 ~ 10461730 (+) True G330044
TU390982 lncRNA upstream 28425 10452983 ~ 10454904 (+) True G330049
TU390975 lncRNA upstream 37854 10412777 ~ 10445475 (+) True G330043
TU390972 lncRNA upstream 109272 10362531 ~ 10374057 (+) True G330040
TU390893 lncRNA upstream 203362 10213263 ~ 10279967 (+) True G329976
TU390989 lncRNA downstream 36223 10519891 ~ 10520607 (+) True G330056
TU390992 lncRNA downstream 49803 10533471 ~ 10533787 (+) True G330059
TU390996 lncRNA downstream 91221 10574889 ~ 10575096 (+) True G330063
TU391001 lncRNA downstream 111534 10595202 ~ 10627892 (+) False gli3
TU391057 lncRNA downstream 261567 10745235 ~ 10745444 (+) True G330121
XM_026938037.2 mRNA upstream 5787 10440957 ~ 10477542 (+) False lztfl1
XM_026938034.2 mRNA upstream 5787 10440961 ~ 10477542 (+) True lztfl1
XM_026938035.2 mRNA upstream 5787 10440961 ~ 10477542 (+) False lztfl1
XM_026938036.2 mRNA upstream 5787 10441309 ~ 10477542 (+) False lztfl1
XM_026938241.2 mRNA upstream 56893 10345324 ~ 10426436 (+) True tmx3b
XM_026937829.2 mRNA downstream 65060 10548728 ~ 10552018 (+) True ccr9b
XM_034297936.1 mRNA downstream 111462 10595130 ~ 10768360 (+) False gli3
XM_026937846.2 mRNA downstream 111462 10595130 ~ 10768360 (+) False gli3
XM_034297935.1 mRNA downstream 111463 10595131 ~ 10768360 (+) True gli3
XM_026937843.2 mRNA downstream 111463 10595131 ~ 10768360 (+) False gli3
TU390970 other upstream 50465 10431333 ~ 10432864 (+) True G330038
TU390686 other upstream 690596 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 1627053 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 1664062 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 1667769 8768745 ~ 8815560 (+) False LOC113532648
TU390999 other downstream 111534 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 390541 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 390541 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 390541 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other downstream 390541 10874209 ~ 10983215 (+) False acad11

Expression Profile