RNA id: XM_026937846.2


Basic Information

Item Value
RNA id XM_026937846.2
length 6966
RNA type mRNA
GC content 0.45
exon number 15
gene id gli3
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10595130 ~ 10768360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAGTATCCACAATGCTCGAAACCACACTCTTTGTTGCCATAAAGCTTTAggaatctttctctctctctctctctctctctctctctctctctctctctctctgtgcgcaCGCGCGCGCTTTGGCTTGTAATGTTCTGGCAGGCTTGTAGAGAAAGTTGCGAGCGTTAGTACACAACTTGAAGCGTCCcggagaagaaaagaaggaaaggacCAAGAAAAGTAAAGTCGGCTAACTCCTGAGTAAAAGCGGAAAGCTTCGGGAGCAGCACATTTGCGAcgagaaagtaaaaaaaaaaaaagtgaagaggAAAGTTCTGAAAAGTCGAACATTTTTCCACAGGGGAAAACCGCATTCGGAAACGAATGGAAGATATCTCAGCCTGCGAGTGGGGAGATAGAGAGCTGTTGGAACATTCCAAAGTTCCTCTGTGCCTGCCTCTGGTGTCTCAGTTTAGATGCGGCACTAAGGAATGTGCAGTCACCATGGAAACACAGTCACAGGCCAGTTCAAcagcagagaagaaaaagagggtGGAGACCATCGTGGCAACCAAAAGATCCTCCTTGACCCGAACTGAGATCAGCGAGAAGGCTGTGGCTTCCAGCACCACATCCAACGCTCCGACTCAGTTCTTCCCTGGATTCCACCCTCCTGTGCCAATCGacgacagacacacacagggacgTTACATCTATGAGCCCTCTCCAGTGCCACCGCTCCATGTGCCCCCTGTATTGGCCGGCAGCCCTGCATTTTCTGATATCTCCGTCATCAGAATCCCACCCCACCGGAATTCCTCAGGGGTTGGCGTGGACTCGCCCTTTAGCCCCCCACACCCGTACATCAACCCCTACATGGACTACATCCGCTCCATTCACAGCAGCCCCTCTCTTTCTATGATCTCTGCAGCCAGGGGACTCAGTCCTACAGATGCCCCACATACTGGTTTGACCACTGCAGAATACTACCATCAGATGGCACTGCTTGCAGGTCACAGAAGCCCCTATGCTGACATCATTCCCTCCACCATGTCCACTACCGGAGCGGGGACCAATGCTTTGCACATGGAATACCTCCAGGCTCTGGAAGcAGGTTCTCGCTTTCCCAGTCCGAGACTCCTTGCCCGTCAGGGCAGGAAGCGCCCCCTTCCTGGCTCACCACACTCAGACTCGAGTTTTGATTTTCAAGCGATGATCCGGAAATCACCAAATTCCCTGGTGAGCATCCTGAACAGCTCGCGGCCCAGTTCATCCACCAGTGGATCCTACGGCCATCTATCCGCTGGCACTATCAGTCCTGCACTGAGTTTTGCCTACCCTCCCACCCCAGTGGCACTGCAAATGCATCAGCAGCTCATTGGCCGGCCTCCAGGCATTGTGAGTTCTGCTTTTGGGCACAGTCCCCCGCTCATCCACCCTGGCCCTGCCTTTACTACCCAGAGGCCCATAGCAGGCATCACCCCCACAGGACCTGGACTCACAGAGTGCTCCGCAAACTCCACTGACTTACAAagtaAACCCACCAGTGAGTCAGCAGTGACCAGCACAGGAGACCCCATGCACCACAAACGCTCCAAACTCAAGCCTGTTGATGAGCCTTCCAGCCCTGGAGCAGTTagtgtacagGATCATTCAGATGGAATGACCCTGGTGAAAGAGGAGGAAGATAAGGAAGATGGGAAACAGGAGCCAGAGGTGGTATATGAGACCAACTGCCACTGGGAGAACTGCTGCAGAGAGTTTGACACTCAGGAACAGCTTGTACATCATATAAATAATGACCATATCCATGGGGAGAAGAAGGAGTTTGTGTGTCGATGGGAGGAGTGCTCTCGAGAACAGAAGCCCTTCAAGGCCCAGTATATGCTGGTGGTACATATGCGCAGGCACACAGGCGAGAAACCACACAAGTGCACGTTTGAGGGCTGTTCCAAGGCCTATTCTAGACTGGAAAACTTGAAGACACACTTACGCtctcacacaggagagaagccttatgtgtgtgagcatgagGGCTGCAACAAGGCCTTCTCAAATGCATCAGACCGTGCCAAACATCAGAATCGGACCCACTCCAATGAGAAACCCTATGTATGCAAGATACCTGGCTGCACCAAACGCTACACTGACCCCAGCTCTCTGCGCAAACATGTAAAAACTGTTCATGGTCCTGAAGCCCATGTGACTAAGAAACAGCGTGGAGACGTTTACCCCCGACCCCCGGCCCATCCCCGCGAACCTGGAGCCAATGGACAGGGCAGGTCATCAAAATCACAACGCCCCTTTGAAGCGTTTCCTGACCAAAGGGAGTATAACCATGCTACCTCAAAACAAGATGAATGTCTGCAAGTCAAGTCAATCAAGACAGAGAAGCCCATGACGTCTCAGCCAAGCCCTGGCAGTCAGTCTTCATGCAGCAGTGACCAGTCCCCCACCAGCTCCCATCTCAGCCGTGGAATCCAGCTTGCTGTGAGCACTATTGGCCTTGTGGgggaggaggtggtggaggacCAGGAGTTTGAACAGGAAAATGAAGAGAAGAACACTGCGAGAGAAGAGGAGGATTCCCCCATCATGGTCTCCACTGCATCCACTGCTACAGCCACGACGGCTACTCTAGCCTTACAGCCCCGCAGGAGTCTGAGTCAGCCCTTGCGCTGGATGGAACAGATTAAGATGGAAAGGCTTAGGCAGGTGAATGGCGGGACGTCAAGGCTGGGACATCTGTCACCTACAGCACCCTCTAAAGGCCACAGTCTGCCCTCCCTCACAGGGAAAGGCTTGGTTACTGTCAGGAGTACTTGTGGGGGTGCACCAGTGCCTCAGCCTCCTTTACATCCCGAGCCATCCAGCACAGAGCTGACAATGCTGAGCCTCTTACGGGATCGCCGTGACAGCAGTGGCAGTGCCACCAGCTCAGCCTACCTAAGTAGCAGCCGCCGTTCCTCTGGCATCTCTCCCTGCTTCTCAAGCCGCCGCTCCAGCCAAGCCTCACAGTCTGAGCACAGCCAGCAGAGACAGCTGCACAACCTCAGTGCTACTGACTCATATGACCCCATCTCCACTGATGCCTCACGTCGCTCCAGTGAGGCTAGCCaatgtggtggaggtggtggttcTGGTGGGGTAGTGCTTGGAGGAAGCTGGGGTGGTGGAAGTGGAGGTGTGGGAGGAGGTGGGGTGGAATCAAGAGGTGTTTTGAACCTAACACCAGCACAGCATTATCATCTCAAAGCCACATATGCAGCTGCAACTGGTGGGCCCCCTCCAACGCCTTTGCCTAATGTGGAACAAGTGAGCTATAAAATTCAAATGACTATGGCCAGGGATGTGAAAGGCATGAAAGGCACAAACCAGCTCATATTGCCATCACTAGTCAGACCACGTTGCAGTAGTGATAGTAGTTCTCATGGACAAAGCAGTCACATTAGGTACAGACAGAGGGGATTGTATCCAGGGGAAGGCCCAGGCAATAGTGACAGAAGAGCAAGTGACCCTCTAAGGTCAAGAGACCAAAATACCTTTGGAAGTATCCAGATACAGCGTTTTGGCAGCCAGAATAACATGGACCACTTACCCCCTCTGGCTGGTAATAATGTCCCAGGTGGTGTTGGTAAAAGTACAAACCACCAAAACTACACCAACTTAGAGGGCAATATGCAGAGTGGCCAGCTCTCCCCTTTCTCTCCTAGCATCATGGAACAAACAGCACTTGAAGCTTTAGCAATGGAGCATGATGGGGCTCTCTTATTTAGGGATGATGATGTTCTTGCTGAGGACCATGAAGCTTCCTGCAGCcagcaaaatggcaaaaattcCCAATTTCACAGAAATTATTTTGCCCAGAATAGTGAGGAGGTGCAAAACGTCCAGAATCCTTCACAGCATCATGGGGCCCAAGAAGCACAAAGGCCCAGGAAAGATAGCCTACCAATCCAGTGGAATGAGGTAAGCTCAGGAAGTACTGATTTTTTACCTCCTCGGGAGCCACTGAGGTGTGAGCAGTTGCCAAACCAAATTAATGCAGTAGGCCTTCCATTTGGTCGTTTTGAAAATATGATTGTACAACAGCAGCTCCCTTCATACCTTACAGACCAGCGACACCCTAATCAGAGGGGTAGTGTTCAGCAAATAACTGAACTGACCAATGGACACAATTACCCAAATCAACACAGGCATGGATCAAATTCAAGCCAACAGCTATCTTGCAGAATGAGACAGGGTGTGTCGGTGGAGACTACACAACAGAACTGCAATGTCACAAGGAGGAACAGCTCAAGCACATATAACTTTGGTCAGCAAAACTGTCAGAATGCCCTGGGCCCTCATCAAGCCAGTCAGTCACAAACTCAACAGCTTCAACAGAGCCATGAAATTCCATGTCAAACAAGTGGAAACTCGCTCAAGCAAGGAACAGTAAAGTCCAGTTTATCCCATGTCTTTGTACTCTCTCTTCAATCCCAGTGTGCAATGGTTAGCCAGCCTGTGGATCAAGACCCCTCTCAACCACAACTATATTCCACCCAACAGATCATCAGTAGTCACAATGCACAATCCTACCAAAGTTTTACAAAAGGAAATATCACTAACTGCTCACTTGCTAATCAAGTTTCAGAACTAAAAGAAGAAATAGAAGATCAGCTTCAACCAAACTCATACTCTTCCATGCAGCAACAGCAAGTCTTTCAAAAGCACTGCCAAATGGAATCATTTAAAATTGAGACTGGGGTATCATGTGGACCCTTAGAGGATCTACTGTCCCCTGGGGCTGATCAGGTGACCAGCACAGTAGATAGCAGCCCAGATGGCAGTGTTCGGGATAATGTTGGCCTACGATTTTCTTCCATCCTGGATGATAGCCTTGACCAGGGCAGTTTGGTTTCTAATGTCATCAGTCCTAGTGTTCTTCATGATTTATCACAGACTTCCTCTTGGCTTACAACGCCACACCTCTCAGCTGTACTTCAAAGCTTGCCTCCTGGTACAACTAACATGGCCATTGGCGACATGAGCTCCCTTCTGACTACCCTTGCAGAAGAGAGCAGGTTTCTTGCAATTATGCAGTAGGTTTTATAATACTTCAGTGGATGAGAATGGggaaaacaaataatttactgaagtaattaaaaaaatggattagGAGGAGAAAATCtttgatttatattatatagCATAGTTTGTTAGGGGGAGTTAAATAAAGTATAGACCTGTTATTTGTATATGTCTTAGCCCCCTAAAGAAGGGGATTGGGGAAACcatgtaaatatagtgtaagtatataaatacataaaatcatttcatttgtggAATAATTGAATATCCAGAAGCCAGTTTCATATTTCTTTAAGGTGATTTGGTGACTACAGCATCATTCCCATCTCTTTAAAACAGTactcatttcaattcaattttatttgtatagcacttttaacaatgtacattgtcacaaagcagctttacagaaatatataaattctggatataaattttacatttataaatttatcccacAGTATTCTGTGTATTATTGCTGTTTTGCATTTTGATATAAAATGTTCATAGACATGCATGTTCATTTTTTCAAGTATACACACTGTCTTTTTATGCAAGTAGAACATATCTCATTTATTATAGACAGACAACTTTGCTATCGTCATCAGGTAAAGACAGGTTAAATGTTCCATTTAATAGGCCCTAGTGTTGAAATTTcctatattaacattttaattatgttGTATGTCTTGCATTGgtagtattaaaattatgttcCTGGTCTTGTACTGTACTTGACATTTTTCAAACCTGGCTACATATACAAGGGACCATTTTATTACACAAGGGTGGACCAGAGCCTCATATGAATAATTATACTACTTTATTTACCATGATTGCATACATAGactttatatgtatatagacttttccctatttttttttacaccttgCATATTTGGTTTAATTACTGGTGCTTATGACAAGCTGTAAAAGACTAAGAGGTTGTAATTCGCCAacgtctgtttttttccccaaagaggATAAATTTTAATATGATTGATAAAATGTGCcaataaagtattattattattattattattattattattattatattatattaacccATTTTAGGTTTTACCACATATCTCAAAGtaattttgtctgttttttaaaaatctaagtGTATTATTTCACAACCATGGTTACCAAGTATTTCATATTACAAATAACTTTTAAGTGAACCTGTCCTGATTTGCCTGTGAAGAAATTTGATACAATGTGGAGATAATTTGGACAAGTCACCagaattaataaattttttagCAGTATTAAAAACCTCTAGTTATGCGTACCTGCATATGTACAGTATTATGAGTCATGCTGTAGGAAATAGGTACTGTTTAAAATAGGTATGTTGTTATTGTtgatgttgttattgttatgttATTGTTTTCCAAGTGTTATGATACATTTCCTGAGGAAAGGACTGGATGCAGAATTGGGGGGGAGGGGGGACAAAGGTTTGTGTCTGATTAGTGCCTACTGATATCAAGAGGAACACTGCCAGTCTTTTATAAGgcattattacaaaaaaaaggaaaaaggtcAAGAGACCTACAATTTCACATACAACTCAGTAACCACTAATGATTCTGGTACAAGTGAGGTGTTAGGTGTAAATGTAACAtcaaaaaaaagagcaaaaatattggaagatattttaacacatttcttgcctttttataattgtaaatatgttatCCATCTGTAGACTGTATAGGAGTGTTTAGATGACAAAGTTTGCCAAGATGAGCATACATACCAAGCAGGAATCCCAAAGAAGAACTAGGGTTCTAGTCAAAGTTCATAGCACCACCAGATGGAATTCAAaatctgaataattttttttttgtaacaaaccacaacaaatgtttgtaagactttaataaaaatgaaataatgtgcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390996 lncRNA upstream 20034 10574889 ~ 10575096 (+) True G330063
TU390992 lncRNA upstream 61343 10533471 ~ 10533787 (+) True G330059
TU390989 lncRNA upstream 74523 10519891 ~ 10520607 (+) True G330056
TU390985 lncRNA upstream 111462 10483329 ~ 10483668 (+) True G330052
TU390982 lncRNA upstream 140226 10452983 ~ 10454904 (+) True G330049
TU391208 lncRNA downstream 202835 10971195 ~ 10971618 (+) True G330259
TU391210 lncRNA downstream 218348 10986708 ~ 10988052 (+) True G330260
TU391307 lncRNA downstream 225464 10993824 ~ 10994253 (+) True G330350
TU391308 lncRNA downstream 229670 10998030 ~ 11001836 (+) True LOC113541116
XR_003404149.2 lncRNA downstream 229680 10998040 ~ 11001838 (+) False LOC113541116
XM_026937829.2 mRNA upstream 43112 10548728 ~ 10552018 (+) True ccr9b
XM_026938037.2 mRNA upstream 117588 10440957 ~ 10477542 (+) False lztfl1
XM_026938025.2 mRNA downstream 42246 10810606 ~ 10828391 (+) True prpf4bb
XM_026938026.2 mRNA downstream 73323 10841683 ~ 10860448 (+) True pxdc1b
XM_026938041.2 mRNA downstream 105849 10874209 ~ 10983215 (+) False acad11
XM_034298145.1 mRNA downstream 105849 10874209 ~ 10983215 (+) False acad11
XM_034298146.1 mRNA downstream 105849 10874209 ~ 10983215 (+) False acad11
TU390970 other upstream 162266 10431333 ~ 10432864 (+) True G330038
TU390686 other upstream 802397 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 1738854 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 1775863 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 1779570 8768745 ~ 8815560 (+) False LOC113532648
XR_004576967.1 other downstream 105849 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 105849 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 105849 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other downstream 105849 10874209 ~ 10983215 (+) False acad11
TU391206 other downstream 204904 10973264 ~ 10974915 (+) True G330257

Expression Profile