RNA id: TU391176


Basic Information

Item Value
RNA id TU391176
length 806
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G330229
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10759997 ~ 10760802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGTTTCACTGACTGGCTTAGAAACCGTGAGTAGGAACATACAACAaccagccataacattaaatccacctgcctaatattgtgtaggtccctccagaacagctctgagccattgaggcatggactccacaagacctctgaaggtgtgctgtggtatctggcaccaagacattagcagcagatccttgcAAGTcctaagttgcgaggtggggtttccatggatcagactcgtttgtccagcacattccccagatgctcgattggatctGTGGAACTTGatgccaagtcaacaccttgaacttttgtcatgttcctcaaaccattcctgaacaatttttgtagtgtggcacggtgcattatcctgctggaagaggtcaactgccattagggaataccactgCAATGAAGGGGATGTACTttgtctgcaacaatgtttaggtaggtggtacatgtcaaagtaacatgaatgcacatgaatgccaggtcccaaggtttcccagcagaagattgtccatcacactgcctctgccggtttcttcttcccatagtgcatcttgCTGCAATCTTTTTCCCAGTTAAGTGACACACACCACTGGCCgtccatatgatgtaaaagaaaacatgattcatcagccaggccaccttcttccattgctccatggtctagTTCTGATGTGCAGGTGCCTATtgttggcccttgtcaaagtcgctcagatcattacatttgcccatttttcatgcttctaacacatcaacttcgagaaccgactttCTGCCTAATATAACTCACCTGTTGaaaggtgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391166 lncRNA downstream 16004 10743431 ~ 10743993 (-) True G330219
TU391071 lncRNA downstream 120852 10631160 ~ 10639145 (-) True G330132
TU391126 lncRNA downstream 240600 10518865 ~ 10519397 (-) True G330182
TU390955 lncRNA downstream 440604 10317593 ~ 10319393 (-) True G330030
TU390916 lncRNA downstream 546133 10208581 ~ 10213864 (-) True G329996
TU391177 lncRNA upstream 1143 10761945 ~ 10762347 (-) True G330230
TU391180 lncRNA upstream 2705 10763507 ~ 10763892 (-) True G330233
TU391179 lncRNA upstream 3790 10764592 ~ 10766784 (-) True G330232
TU391225 lncRNA upstream 21304 10782106 ~ 10819317 (-) True G330274
TU391229 lncRNA upstream 49867 10810669 ~ 10812838 (-) True G330277
XM_034297838.1 mRNA downstream 603197 10151497 ~ 10156800 (-) True LOC113541109
XM_034297837.1 mRNA downstream 940464 9796334 ~ 9819533 (-) True LOC113532851
XM_026924858.2 mRNA downstream 1042431 9687555 ~ 9717566 (-) False mppe1
XM_026924857.2 mRNA downstream 1042433 9687555 ~ 9717564 (-) True mppe1
XM_026923982.2 mRNA downstream 1187792 9552595 ~ 9572205 (-) True elovl2
XM_026938042.2 mRNA upstream 164745 10925547 ~ 10930775 (-) True ackr4b
XM_034298149.1 mRNA upstream 214972 10975774 ~ 10980139 (-) True si:dkey-12l12.1
XM_034298200.1 mRNA upstream 345612 11106414 ~ 11109555 (-) True LOC113541107
XM_026938249.2 mRNA upstream 547952 11308754 ~ 11310736 (-) False prlh2
XM_034298214.1 mRNA upstream 547952 11308754 ~ 11310736 (-) True prlh2
TU391129 other downstream 236734 10522732 ~ 10523263 (-) True G330185
XR_003404173.1 other downstream 475060 10284834 ~ 10284937 (-) True LOC113541360
TU389089 other downstream 3373691 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 3697569 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 4330065 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003404157.2 other upstream 162324 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 321466 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 1915779 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other upstream 1915779 12676581 ~ 12677933 (-) False LOC113541288
XR_003404167.2 other upstream 4176084 14936886 ~ 14937404 (-) False LOC113541102

Expression Profile