RNA id: TU391177


Basic Information

Item Value
RNA id TU391177
length 403
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G330230
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10761945 ~ 10762347 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAAGGTACTTATAAGTGCATTTATTAAtgtcagattattttatttcagaaagagtatatgattattttatttcacaaataagTGCATAGGAAATGATTTGAGTGTAAAAAGGGGCTCACCATGGGCTTCTCTGTCTTGATTGACTTGACTTGCAGACATTCATCTTGTTTTGAGGTAGCATGGTTATACTCCCTTTGGTCAGGAAACGCTTCAAAGGGGCGTTGTGATTTTGATGACCTGCCCTGTCCATTGGCTCCAGGTTCGCGGGGATGGGCCGGGGGTCGGGGGTAAACGTCTCCACGCTGTTTCTTAGTCACATGGGCTTCAGGACCATGAACAGTTTTTACATGTTTGCGCAGAGAGCTGGGGTCAGTGTAGCGTTTGGTGCAGCCAGGTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391176 lncRNA downstream 1143 10759997 ~ 10760802 (-) True G330229
TU391166 lncRNA downstream 17952 10743431 ~ 10743993 (-) True G330219
TU391071 lncRNA downstream 122800 10631160 ~ 10639145 (-) True G330132
TU391126 lncRNA downstream 242548 10518865 ~ 10519397 (-) True G330182
TU390955 lncRNA downstream 442552 10317593 ~ 10319393 (-) True G330030
TU391180 lncRNA upstream 1160 10763507 ~ 10763892 (-) True G330233
TU391179 lncRNA upstream 2245 10764592 ~ 10766784 (-) True G330232
TU391225 lncRNA upstream 19759 10782106 ~ 10819317 (-) True G330274
TU391229 lncRNA upstream 48322 10810669 ~ 10812838 (-) True G330277
TU391230 lncRNA upstream 69024 10831371 ~ 10831586 (-) True G330278
XM_034297838.1 mRNA downstream 605145 10151497 ~ 10156800 (-) True LOC113541109
XM_034297837.1 mRNA downstream 942412 9796334 ~ 9819533 (-) True LOC113532851
XM_026924858.2 mRNA downstream 1044379 9687555 ~ 9717566 (-) False mppe1
XM_026924857.2 mRNA downstream 1044381 9687555 ~ 9717564 (-) True mppe1
XM_026923982.2 mRNA downstream 1189740 9552595 ~ 9572205 (-) True elovl2
XM_026938042.2 mRNA upstream 163200 10925547 ~ 10930775 (-) True ackr4b
XM_034298149.1 mRNA upstream 213427 10975774 ~ 10980139 (-) True si:dkey-12l12.1
XM_034298200.1 mRNA upstream 344067 11106414 ~ 11109555 (-) True LOC113541107
XM_026938249.2 mRNA upstream 546407 11308754 ~ 11310736 (-) False prlh2
XM_034298214.1 mRNA upstream 546407 11308754 ~ 11310736 (-) True prlh2
TU391129 other downstream 238682 10522732 ~ 10523263 (-) True G330185
XR_003404173.1 other downstream 477008 10284834 ~ 10284937 (-) True LOC113541360
TU389089 other downstream 3375639 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 3699517 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 4332013 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003404157.2 other upstream 160779 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 319921 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 1914234 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other upstream 1914234 12676581 ~ 12677933 (-) False LOC113541288
XR_003404167.2 other upstream 4174539 14936886 ~ 14937404 (-) False LOC113541102

Expression Profile