RNA id: TU391179


Basic Information

Item Value
RNA id TU391179
length 2193
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G330232
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10764592 ~ 10766784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTAAAGAGATGGGAATGATGCTGTAGTCACCAAATCACCTTAAAGAAATATGAAACTGGCTTCTGGATATTCAATTATTccacaaatgaaatgattttatgtatttatatacttacactatatttacatgGTTTCCCCAATCCCCTTCTTTAGGGGGCTAAGACATATACAAATAACAGGTCTATACTTTATTTAACTCCCCCTAACAAACTATGctatataatataaatcaaaGATTTTCTCCTCctaatccatttttttaattacttcagtaaattatttgttttccCCATTCTCATCCACTGAAGTATTATAAAACCTACTGCATAATTGCAAGAAACCTGCTCTCTTCTGCAAGGGTAGTCAGAAGGGAGCTCATGTCGCCAATGGCCATGTTAGTTGTACCAGGAGGCAAGCTTTGAAGTACAGCTGAGAGGTGTGGCGTTGTAAGCCAAGAGGAAGTCTGTGATAAATCATGAAGAACACTAGGACTGATGACATTAGAAACCAAACTGCCCTGGTCAAGGCTATCATCCAGGATGGAAGAAAATCGTAGGCCAACATTATCCCGAACACTGCCATCTGGGCTGCTATCTACTGTGCTGGTCACCTGATCAGCCCCAGGGGACAGTAGATCCTCTAAGGGTCCACATGATACCCCAGTCTCAATTTTAAATGATTCCATTTGGCAGTGCTTTTGAAAGACTTGCTGTTGCTGCATGGAAGAGTATGAGTTTGGTTGAAGCTGATCTTCTATTTCTTCTTTTAGTTCTGAAACTTGATTAGCAAGTGAGCAGTTAGTGATATTTCCTTTTGTAAAACTTTGGTAGGATTGTGCATTGTGACTACTGATGATCTGTTGGGTGGAATATAGTTGTGGTTGAGAGGGGTCTTGATCCACAGGCTGGCTAACCATTGCACACTGGGATTGAAGAGAGAGTACAAAGACATGGGATAAACTGGACTTTACTGTTCCTTGCTTGAGCGAGTTTCCACTTGTTTGACATGGAATTTCATGGCTCTGTTGAAGCTGTTGAGTTTGTGACTGACTGGCTTGATGAGGGCCCAGGGCATTCTGACAGTTTTGCTGACCAAAGTTATATGTGCTTGAGCTGTTCCTCCTTGTGACATTGCAGTTCTGTTGTGTAGTCTCCACCGACACACCCTGTCTCATTCTGCAAGATAGCTGTTGGCTTGAATTTGATCCATGCCTGTGTTGATTTGGGTAATTGTGTCCATTGGTCAGTTCAGTTATTTGCTGAACACTACCCCTCTGATTAGGGTGTCGCTGGTCTGTAAGGTATGAAGGGAGCTGCTGTTGTACAATCATATTTTCAAAACGACCAAATGGAAGGCCTACTGCATTAATTTGGTTTGGCAACTGCTCACACCTCAGTGGCTCCCGAGGAGGTAAAAAATCAGTACTTCCTGAGCTTACCTCATTCCACTGGATTGGTAGGCTATCTTTCCTGGGCCTTTGTGCTTCTTGGGCCCCATGATGCTGTGAAGGATTCTGGACGTTTTGCACCTCCTCACTATTCTGGGCAAAATAATTTCTGTGAAATTGGgaatttttgccattttgctgGCTGCAGGAAGCTTCATGGTCCTCAGCAAGAACATCATCATCCCTAAATAAGAGAGCCCCATCATGCTCCATTGCTAAAGCTTCAAGTGCTGTTTGTTCCATGATGCTAGGAGAGAAAGGGGAGAGCTGGCCACTCTGCATATTGCCCTCTAAGTTGGTGTAGTTTTGGTGGTTTGTACTTTTACCAACACCACCTGGGACATTATTACCAGCCAGAGGGGGTAAGTGGTCCATGTTATTCTGGCTGCCAAAACGCTGTATCTGGATACTTCCAAAGGTATTTTGGTCTCTTGACCTTAGAGGGTCACTTGCTCTTCTGTCACTATTGCCTGGGCCTTCCCCTGGATACAATCCCCTCTGTCTGTACCTAATGTGACTGCTTTGTCCATGAGAACTACTATCACTACTGCAACGTGGTCTGACTAGTGATGGCAATATGAGCTGGTTTGTGCCTTTCATGCCTTTCACATCCCTGGCCATAGTCATTTGAATTTTATAGCTCACTTGTTCCACATTAGGCAAAGGCGTTGGAGGGGGCCCACCAGTTGCAGCTGCATATGTGGCTTTGAGATGATAATGCTGTGCTGGTGTTAGGTTCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391180 lncRNA downstream 700 10763507 ~ 10763892 (-) True G330233
TU391177 lncRNA downstream 2245 10761945 ~ 10762347 (-) True G330230
TU391176 lncRNA downstream 3790 10759997 ~ 10760802 (-) True G330229
TU391166 lncRNA downstream 20599 10743431 ~ 10743993 (-) True G330219
TU391071 lncRNA downstream 125447 10631160 ~ 10639145 (-) True G330132
TU391225 lncRNA upstream 15322 10782106 ~ 10819317 (-) True G330274
TU391229 lncRNA upstream 43885 10810669 ~ 10812838 (-) True G330277
TU391230 lncRNA upstream 64587 10831371 ~ 10831586 (-) True G330278
TU391239 lncRNA upstream 69305 10836089 ~ 10836352 (-) True G330287
TU391241 lncRNA upstream 72346 10839130 ~ 10839552 (-) True G330289
XM_034297838.1 mRNA downstream 607792 10151497 ~ 10156800 (-) True LOC113541109
XM_034297837.1 mRNA downstream 945059 9796334 ~ 9819533 (-) True LOC113532851
XM_026924858.2 mRNA downstream 1047026 9687555 ~ 9717566 (-) False mppe1
XM_026924857.2 mRNA downstream 1047028 9687555 ~ 9717564 (-) True mppe1
XM_026923982.2 mRNA downstream 1192387 9552595 ~ 9572205 (-) True elovl2
XM_026938042.2 mRNA upstream 158763 10925547 ~ 10930775 (-) True ackr4b
XM_034298149.1 mRNA upstream 208990 10975774 ~ 10980139 (-) True si:dkey-12l12.1
XM_034298200.1 mRNA upstream 339630 11106414 ~ 11109555 (-) True LOC113541107
XM_026938249.2 mRNA upstream 541970 11308754 ~ 11310736 (-) False prlh2
XM_034298214.1 mRNA upstream 541970 11308754 ~ 11310736 (-) True prlh2
TU391129 other downstream 241329 10522732 ~ 10523263 (-) True G330185
XR_003404173.1 other downstream 479655 10284834 ~ 10284937 (-) True LOC113541360
TU389089 other downstream 3378286 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 3702164 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 4334660 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003404157.2 other upstream 156342 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 315484 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 1909797 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other upstream 1909797 12676581 ~ 12677933 (-) False LOC113541288
XR_003404167.2 other upstream 4170102 14936886 ~ 14937404 (-) False LOC113541102

Expression Profile