RNA id: TU391307


Basic Information

Item Value
RNA id TU391307
length 430
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G330350
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10993824 ~ 10994253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cattgctatataatgattgtgtgcatgtttctgttgtaGTCTTATTcttagttaattttgctacagtattaaataagaatctaggattatttttgttatcttcaattagggtggagagatacattgatctagcagcactaagagctttcttatagctcaaaaggctctccttccatgctatttgaaatactaccgatttagtttgacgccatttacgttctagttttcaagttttctgttttaaagtttgtgtgtgatcgctataccagggtgctagctttttctccctaattatttttgagtggagctaccttatttagcgagttgcagaacgttgattctaagcatacagttgcctggtcaagttctctgggatcagatggtgatccaatcatggtaaaactctgtgcagttatTGACGTGCaagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391210 lncRNA upstream 5772 10986708 ~ 10988052 (+) True G330260
TU391208 lncRNA upstream 22206 10971195 ~ 10971618 (+) True G330259
TU391058 lncRNA upstream 243785 10749753 ~ 10750039 (+) True G330122
TU391057 lncRNA upstream 248380 10745235 ~ 10745444 (+) True G330121
TU391001 lncRNA upstream 365932 10595202 ~ 10627892 (+) False gli3
TU391308 lncRNA downstream 3777 10998030 ~ 11001836 (+) True LOC113541116
XR_003404149.2 lncRNA downstream 3787 10998040 ~ 11001838 (+) False LOC113541116
TU391437 lncRNA downstream 360367 11354620 ~ 11355001 (+) True G330457
TU391431 lncRNA downstream 360433 11354686 ~ 11355001 (+) False G330457
TU391617 lncRNA downstream 389183 11383436 ~ 11383662 (+) True G330616
XM_026938041.2 mRNA upstream 10609 10874209 ~ 10983215 (+) False acad11
XM_034298145.1 mRNA upstream 10609 10874209 ~ 10983215 (+) False acad11
XM_034298146.1 mRNA upstream 10609 10874209 ~ 10983215 (+) False acad11
XM_026938040.2 mRNA upstream 22998 10874209 ~ 10970826 (+) False acad11
XM_034298147.1 mRNA upstream 23523 10874209 ~ 10970301 (+) False acad11
XM_026938117.2 mRNA downstream 128142 11122395 ~ 11308612 (+) True myrip
XM_026938118.2 mRNA downstream 128142 11122395 ~ 11308612 (+) False myrip
XM_026938120.2 mRNA downstream 128142 11122395 ~ 11308612 (+) False myrip
XM_034298231.1 mRNA downstream 128142 11122395 ~ 11275909 (+) False myrip
XM_026938121.2 mRNA downstream 136429 11130682 ~ 11308612 (+) False myrip
XR_004576967.1 other upstream 9615 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other upstream 9615 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other upstream 10609 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other upstream 10609 10874209 ~ 10983215 (+) False acad11
TU391206 other upstream 18909 10973264 ~ 10974915 (+) True G330257
TU391847 other downstream 743905 11738158 ~ 11748559 (+) True ankha
XR_003404147.2 other downstream 1068079 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 1712686 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 2263641 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 2390948 13385201 ~ 13385274 (+) True trnat-agu_17

Expression Profile