RNA id: TU391308


Basic Information

Item Value
RNA id TU391308
length 3393
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC113541116
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10998030 ~ 11001838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatatgaccacatcacccctatcttatccacactgcattggcacCACCTGGACCACCTGGCTGGACCAATCACTATGGTGACTTCATTACACCCATCTTGAGCATGGCCGTGAGCTCCTCCTGCAACacctgttttttgtgttttggcaAACGGTAATATCGTCTGCATACCACCACCCCTGTGGGCGTCTCAGTGTGGTGTTTTGTCAGATTATTGCAGAAAGTTAGTGGCCAAAACTGTCAgaaaactgtcagaaaaaatGTCATAAATCTACTCCTGCAGCTTGGCAACCTCTGTGATTTGGGACGGAGAGAATTGGTCTACATAGGGGACCAGAATGGATTGAGCTATACGATTAAGATTCACTTCCAGTCCCAGCTCCTCCTTCTCGAGAACCATTGTTGCCAAAGCCACAGGGACAGCCTCTGTCCATGGTTTGAGGAGACAGAGATGGTATATTTGCAGTGCCCTGCCTCAATCTATTTACCTTACTTCATAGTCGAAATCCCTGACTCATTATTTGACCTCAAATGGCCCATGCCACTTTTGCGAGTAAAATTGCACTTTATCTCCCGGTGAAAGATCCCGCCTTTTAAACAGCTGGGATTGATTGTGCCTGTAGCAAATTCTCGTGTGTTGGttaatgtgtggagttttgctctcaggtcaagatatactgaatttcacttttacTTTGTGAAAGTCCTTCCACCCATTTTCTCAAGATGACTTCTAAGATGCCGCAGGGCTTGTGCCCATATAGCAATTCAAATGGAGTGAAGTCTGTGGAGGCTTACGGGACCACTAGTACTGCAAATAATAGGGCTcgagccacttatcccaattctaATCATTATTGTGTAACTCATATCTTTCGATCATATTTTTTGACCAGGTCTTTTGTTTGCAGATTGTAAACGCTGGTATGAATCAATTTAATTCCTAATAGTTCATACAGTTCTTGAAGTGCATGTGACATAAATGTGGTGCCTTGATCAATCAGAATCTCTTTTGGGATTCCAAATCTGGAGATTATTTTGAAGATTGCCACCTCAACATGCATGCTGAGATTTTGCAAAGAGGCAAGGTTTCCATGTATATTCTACTATAACTAATACAAAGTGAAGCCCTCATGCACTCCATTCTAATGGCCCAATGAGGTCTATCCCAATTCTTTAGCATGGGACCTTGATTAATGGAAGGAGTTCAGTGGTGCTTTTGTGGTGGTTGGTGGATTCATCAGCTGACATTCGTGACATGCCACACACCCATACCACCAACAGCATACATTCCAATGATGCCAGAAAAATTGTTCCCCCAAGCCAACTCTGTTCACGTCCCACATTGTGCTACTCTATTACGGGACTGATCCACACAAATTCCCCTTAACAATGTTGGAAAGTCTGGCCAGTTTGTCTGCAAAAtcagtggatgggtgaggcgagGACTATCTACTGCCTCTATTCTATGTTTTTGTCCCCGGAGTTGAATGACAGGCAATAGTATATATTCATTCTCATCCCCATGCATACACCTCATCTTCACCCAGCGTGCTCTATCCAGTGCCTCACCTTGAACCAAGTGTTTGTGAATTGAGGTTTGATTACACCCCAAATCCACCAACATCATGTATGTACGCCCTGGAATTACCACAGTATTCCAGTATACACAGTACTCCTCCAAACCACTggaaattacaattttataaattacagtaattacaaattacaaatgaaCTATAAACTACTAGGAgaataacagaaacaacagaaaCTTGAGTAAACATGCAGCATCTTTATGCTTCCTCTGTAATGAAAGTGGAATCTGGTTCTGCCAGGGAGTCAGAATCCGGCACAACACGTTGTATTGGctaggagagaaaaaaaaaaaacaaaacgaaacaGTTTAATCCCTTTCTAATGATCATCGccatatttgtaaattgttagaTTCTACACTTCTTTGTAGGCGTATATAATCTTTTTAGGTCAAAatctccctttttctttttggcTGAAAAACGAAagagccgttttttttttttttttaccattttcatGCCAAAATATTTTGGTGGCATCCCTAATAATTAACTGACGTTACCTTTATATGTGTTTAATGTTAGCAAAGTCAAACACGTtgaaaaattttatttcaatttaatgaactcaaaatagTCTCCATGTACCATGACAGAAAGCGAGTGCACCCTGTGAGTTAAAATCATGTGGGATTGGgagaaaggggcggggcttccaggcagtGTCAGTTAATGTCAAAGAGTTGAAAATATCACACAGATCACTCCAGATTAATgtttattggggagaaaaagactgctgcatatttttgagtgatttgTACTTGTACAAGTGTACGCTGATGTTAAACTGCAGAGCTTCTACGCAAAATGTATAAAGGTTGGCATGagtggtaatataatataatggaagtaaatgacactagatatggtggcagtgtaatattgtgtgggggcaataaaatcattatattgCACACACCTAATGCAcagatttaatataatatttaaaattttgcatatttattgcaccagtttatttactttcattgataacagtgtagcctaaaaaagtatttaaagcTGGAAATATAATTTGAAGTCTGTGTGTAGCTGTTAACTGAAGTGCAGTTTAGAGCATTCTTTGCTGtacaaataaatcagtgttAAAATAGCAATGCCCTGATATATTGCTTTGAATATGGACAAGTCAAGTAGTcgacatctttttttaaattactggtCAACTAGTAAAAATTTGTAGTCATGCATCCCCTAGCGTGTGTGTCTGCCACTGGtctccagtgtgtgtttgttttatctcTGCTGTTTTAAGGCCTGATTGAATGACCAAATCCTGTGATTAACTGGATAAATAATGTCTGTCAATTGAATTACATAACTCGGTGGGGTAACGGCTGTGGAGCGCTATAACTACTTGATTTAGGACCAGACCACAGAAGACTATAATCGCTTCTGGTGAGAGTGGTAACAACAGTGGAAAAGAAGGGGAAAGAATCACTCTGACAACCAGGTCAAAAAGGATTCTGGTTTCCCAGGAAGGATCCAGCTGATTGGCTTGCCAGTCCAAGCATTGCACCAGTACCAGGATACCCGCAAGGCAAGGACAGTTCTCCAGATACTCGAAGGAACTCTCTCTCGATTGAGGAAGAAGGAAGATGAAAGGAGAAAGCAATGATAGGAAGGGAAAGTCAAATATCAACTCACAACTGCATAACATTCAACTTACAACTCATTAAACATTTCACTGACACATGCAACAATACCAATGTAACATATAACTCTTGAATAAACAtatatgacataaaaaaaaatcacatttccaCTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391307 lncRNA upstream 3777 10993824 ~ 10994253 (+) True G330350
TU391210 lncRNA upstream 9978 10986708 ~ 10988052 (+) True G330260
TU391208 lncRNA upstream 26412 10971195 ~ 10971618 (+) True G330259
TU391058 lncRNA upstream 247991 10749753 ~ 10750039 (+) True G330122
TU391057 lncRNA upstream 252586 10745235 ~ 10745444 (+) True G330121
TU391437 lncRNA downstream 352784 11354620 ~ 11355001 (+) True G330457
TU391431 lncRNA downstream 352850 11354686 ~ 11355001 (+) False G330457
TU391617 lncRNA downstream 381600 11383436 ~ 11383662 (+) True G330616
TU391882 lncRNA downstream 824303 11826139 ~ 11826390 (+) True G330856
TU391895 lncRNA downstream 872156 11873992 ~ 11874192 (+) True G330869
XM_026938041.2 mRNA upstream 14815 10874209 ~ 10983215 (+) False acad11
XM_034298145.1 mRNA upstream 14815 10874209 ~ 10983215 (+) False acad11
XM_034298146.1 mRNA upstream 14815 10874209 ~ 10983215 (+) False acad11
XM_026938040.2 mRNA upstream 27204 10874209 ~ 10970826 (+) False acad11
XM_034298147.1 mRNA upstream 27729 10874209 ~ 10970301 (+) False acad11
XM_026938117.2 mRNA downstream 120559 11122395 ~ 11308612 (+) True myrip
XM_026938118.2 mRNA downstream 120559 11122395 ~ 11308612 (+) False myrip
XM_026938120.2 mRNA downstream 120559 11122395 ~ 11308612 (+) False myrip
XM_034298231.1 mRNA downstream 120559 11122395 ~ 11275909 (+) False myrip
XM_026938121.2 mRNA downstream 128846 11130682 ~ 11308612 (+) False myrip
XR_004576967.1 other upstream 13821 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other upstream 13821 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other upstream 14815 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other upstream 14815 10874209 ~ 10983215 (+) False acad11
TU391206 other upstream 23115 10973264 ~ 10974915 (+) True G330257
TU391847 other downstream 736322 11738158 ~ 11748559 (+) True ankha
XR_003404147.2 other downstream 1060496 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 1705103 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 2256058 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 2383365 13385201 ~ 13385274 (+) True trnat-agu_17

Expression Profile