RNA id: TU391431


Basic Information

Item Value
RNA id TU391431
length 316
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G330457
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11354620 ~ 11355001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatgactctTGCATTACTGAagcagtacaaaaacatttcagatttccaaacattactttttcaACCAAAAAttcaatgttacagaaaaatgtatgtatatcagtaaagaaagtaaccTATTACATAATACACCACTCTTCAGACAAAAAATTTAATGAAGGCTATCCGGTTttacctgcaaaaacagaagcaagtatGACAAAGTCTACaggttctccaagatgctcagtaaaacttaccagccatTTTCCTCATAAAACTGCACGGATcatacctgagactactgatgtgtttttaaaaagcaaagggttgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404149.2 lncRNA upstream 352848 10998040 ~ 11001838 (+) False LOC113541116
TU391308 lncRNA upstream 352850 10998030 ~ 11001836 (+) True LOC113541116
TU391307 lncRNA upstream 360433 10993824 ~ 10994253 (+) True G330350
TU391210 lncRNA upstream 366634 10986708 ~ 10988052 (+) True G330260
TU391208 lncRNA upstream 383068 10971195 ~ 10971618 (+) True G330259
TU391617 lncRNA downstream 28435 11383436 ~ 11383662 (+) True G330616
TU391882 lncRNA downstream 471138 11826139 ~ 11826390 (+) True G330856
TU391895 lncRNA downstream 518991 11873992 ~ 11874192 (+) True G330869
TU391946 lncRNA downstream 540665 11895666 ~ 11895891 (+) True G330908
TU391950 lncRNA downstream 589029 11944030 ~ 11946238 (+) True G330911
XM_026938118.2 mRNA upstream 46074 11122395 ~ 11308612 (+) False myrip
XM_026937985.2 mRNA downstream 15262 11370263 ~ 11374505 (+) True chmp4c
XM_026938251.2 mRNA downstream 23300 11378301 ~ 11382806 (+) True LOC113541334
XM_026937960.2 mRNA downstream 36308 11391309 ~ 11486305 (+) True asap1b
XM_026937973.2 mRNA downstream 133915 11488916 ~ 11553217 (+) True fam49bb
XM_026938296.2 mRNA downstream 362414 11717415 ~ 11743711 (+) False ankha
XR_004576967.1 other upstream 370477 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other upstream 370477 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other upstream 371471 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other upstream 371471 10874209 ~ 10983215 (+) False acad11
TU391206 other upstream 379771 10973264 ~ 10974915 (+) True G330257
TU391847 other downstream 383157 11738158 ~ 11748559 (+) True ankha
XR_003404147.2 other downstream 707331 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 1351938 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1902893 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 2030200 13385201 ~ 13385274 (+) True trnat-agu_17

Expression Profile