RNA id: TU391895


Basic Information

Item Value
RNA id TU391895
length 201
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G330869
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11873992 ~ 11874192 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGAGCCCTCTCGTCCTCGCGCAGCTCTGCGCCTTCCATCTCTCCTCTCAGGGAGAGCAGCGGCTTGCTCAGCTGCCCAGTGATCATTGGAGCCTGGAGCAGGAAGGAGAGATGGAAGGAGGAGGGGAAAATCACTGGTTAGCACTTGGGTTCTCTCGCTTGCTATCGCtctcaaatgcacacacactcgcatgtGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391882 lncRNA upstream 47602 11826139 ~ 11826390 (+) True G330856
TU391617 lncRNA upstream 490330 11383436 ~ 11383662 (+) True G330616
TU391437 lncRNA upstream 518991 11354620 ~ 11355001 (+) True G330457
TU391431 lncRNA upstream 518991 11354686 ~ 11355001 (+) False G330457
XR_003404149.2 lncRNA upstream 872154 10998040 ~ 11001838 (+) False LOC113541116
TU391946 lncRNA downstream 21474 11895666 ~ 11895891 (+) True G330908
TU391950 lncRNA downstream 69838 11944030 ~ 11946238 (+) True G330911
TU392006 lncRNA downstream 150384 12024576 ~ 12034059 (+) True G330962
TU392027 lncRNA downstream 267751 12141943 ~ 12142865 (+) True G330976
TU392061 lncRNA downstream 337058 12211250 ~ 12273290 (+) True G331003
XM_026938296.2 mRNA upstream 130281 11717415 ~ 11743711 (+) False ankha
XM_026938297.2 mRNA upstream 130281 11717498 ~ 11743711 (+) False ankha
XM_026937973.2 mRNA upstream 320775 11488916 ~ 11553217 (+) True fam49bb
XM_026937960.2 mRNA upstream 387687 11391309 ~ 11486305 (+) True asap1b
XM_026938251.2 mRNA upstream 491186 11378301 ~ 11382806 (+) True LOC113541334
XM_026937978.2 mRNA downstream 26563 11900755 ~ 11943508 (+) True vps41
XM_026937798.2 mRNA downstream 188142 12062334 ~ 12156784 (+) False prkag2a
XM_026937799.2 mRNA downstream 196983 12071175 ~ 12156784 (+) False prkag2a
XM_026937800.2 mRNA downstream 221602 12095794 ~ 12156784 (+) False prkag2a
XM_034297816.1 mRNA downstream 249266 12123458 ~ 12156784 (+) False prkag2a
TU391847 other upstream 125433 11738158 ~ 11748559 (+) True ankha
XR_003404155.2 other upstream 889783 10874209 ~ 10984209 (+) False acad11
XR_003404147.2 other downstream 188140 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 832747 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1383702 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 1511009 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 3377443 15251635 ~ 15264587 (+) False si:ch73-173p19.2

Expression Profile