RNA id: TU391950


Basic Information

Item Value
RNA id TU391950
length 1648
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G330911
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11944030 ~ 11946238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcTGACTCAAAGTAGCACAAAGATTCCAGTGAAGACACTTCAGAAGGTTACGCTTTAATTCTGGTTTGCCAATCATGAAATCAGACTTAAAAAGCATACTGAAAAGGgtagaaagagaggaaaagggtGAAAACATTAAATGGAAACAGTTAATCAAAATAGGGTGGGTTTTTTTCTGAACACAGTAAGCCTTGCACCAAATTCatttttgcaataaacaatCAGTGCTTAAGCAGAgtccagggaaaaaaaaaaaaattaaactacaaCTGAGCACTACAATCCAGTACAAGGAAGCAGGGAGGTGGTTTTTACTCCTCGAAGTGGTACAATTGAGGCAAGCAGCAGCTTTCCACACACTCAGCACGTATCTCTCCAGAGGATGATAGACATTTCTCTCACtcatatatacttatatatttctAATCACTCTATGCTTTTACTCTTTACAGTAAGGCCACTTTTAATAGAATTGATTCAAATAGCGCAAGCTTTAGAGCTCCAAAAGGAGGAAAGTGGGGGAGAGACAAGAGATTTTCAAGTTTAGGATGAAGTGTTAAGTGCTCCTCTTCAGCTGGGATTGTGACCAGGCCCAAGGACTCTGTCAACAGGGTAACCACAGATCTGCAACTGAGGTAGTCTTACCCTCTCCTCTGGCCTGACCCAAACACTCCCGCTGTACTCGAatcatgaaaagaaaacaacttcACGTTCAGGAGTTCTGTTGATttagcaaagcaaaaaaatagatgtgtgtaatttcaacAGAAGTTCACTTGATCACATGATAAGAGTCCATCCTCAGAGAGGGCTTTCTCAGAGTTCAGCTGATGTCCCATTGCGCAGCTCTCCAACCATCCACTGCTCTGAGTAAATCCACCATCACAGAAGTTTGCTTGTTTCCACTGTCATAAGAAGGAGAATTTTTAAAGTCACTCAGTCCCCTTTGCCGCAGCCCTTTTAGATGTGTTCAATAAGAGAGAACCTTGGCCAGCCAAGTGTGAGTGAAATACTTGAGGGCACTACTGAATGTCtttgtggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagaggaatcgtgtgagagaacagagagcaaaagagaggaAAGAACCATGTAGTATagacacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcatctCCAGCATGATCAGGACTGCATCAGCACAGCGGCGGGTCATCTTGCCCTGTGGTTTGGACTGCACCATTGGTGGTGGGCTGAGGGGTGAGGACATAACGTTGTTTATTTATCCTCCAGAACGGCAAACTGGTTGTCTAACTGTAAATGCTGCACGGCTCCTGGACCTTCCCCTTCTCTGGCACGGCTCTTGTGTTTGACCACTTCGAACGTCTTCTCAATCTCTCTATCcctaaagtgcaaaaaaaACTTGCGAGTCTCCACGTGTTTGGCAGTTGCAAGAAGTGAGGGGAACTGCGCATCACTGAAGATCTCGGGAGGCCCCTGTGATGGCCCTCTTTTTGGAGGACCTAACCGAGCTCCAGGGGGACGATATACACCAGCAGGCTTCGACTCAGGAACCTCTTTCTCCTCTGCAAAATACAAAGGATGACAGTCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391946 lncRNA upstream 48139 11895666 ~ 11895891 (+) True G330908
TU391895 lncRNA upstream 69838 11873992 ~ 11874192 (+) True G330869
TU391882 lncRNA upstream 117640 11826139 ~ 11826390 (+) True G330856
TU391617 lncRNA upstream 560368 11383436 ~ 11383662 (+) True G330616
TU391437 lncRNA upstream 589029 11354620 ~ 11355001 (+) True G330457
TU392006 lncRNA downstream 78338 12024576 ~ 12034059 (+) True G330962
TU392027 lncRNA downstream 195705 12141943 ~ 12142865 (+) True G330976
TU392061 lncRNA downstream 265012 12211250 ~ 12273290 (+) True G331003
TU392238 lncRNA downstream 502524 12448762 ~ 12450347 (+) True G331161
TU392342 lncRNA downstream 764281 12710519 ~ 12712678 (+) False G331263
XM_026937978.2 mRNA upstream 522 11900755 ~ 11943508 (+) True vps41
XM_026938296.2 mRNA upstream 200319 11717415 ~ 11743711 (+) False ankha
XM_026938297.2 mRNA upstream 200319 11717498 ~ 11743711 (+) False ankha
XM_026937973.2 mRNA upstream 390813 11488916 ~ 11553217 (+) True fam49bb
XM_026937960.2 mRNA upstream 457725 11391309 ~ 11486305 (+) True asap1b
XM_026937798.2 mRNA downstream 116096 12062334 ~ 12156784 (+) False prkag2a
XM_026937799.2 mRNA downstream 124937 12071175 ~ 12156784 (+) False prkag2a
XM_026937800.2 mRNA downstream 149556 12095794 ~ 12156784 (+) False prkag2a
XM_034297816.1 mRNA downstream 177220 12123458 ~ 12156784 (+) False prkag2a
XM_026938259.2 mRNA downstream 216217 12162455 ~ 12179621 (+) True LOC113541340
TU391847 other upstream 195471 11738158 ~ 11748559 (+) True ankha
XR_003404155.2 other upstream 959821 10874209 ~ 10984209 (+) False acad11
XR_003404147.2 other downstream 116094 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 760701 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1311656 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 1438963 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 3305397 15251635 ~ 15264587 (+) False si:ch73-173p19.2

Expression Profile