RNA id: TU392006


Basic Information

Item Value
RNA id TU392006
length 1216
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G330962
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12024576 ~ 12034059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGACGCCAGCAGCACAGCGTCACTGAGCTGTCCTCTCGTGCTGCAGACCCATAAAACCGAGTCTTGTTTTCCGTTATCAGAGATCTGCTGCTGTCATTCCGCGTGCTGTCAGGTCTCCCAATCCAACACACCGCGACAAACCCATTTCCAGTCAGGAATAAGAGTATTTAAGAGGATTTTTGGGGGCTTACCTCTGTGACCGGCGCTTGTGGTGCGGCGGAGTCTCAAAGCGCCACCGCCGACGCCGCCGTTACACCAGTCGCGCGCACCGGATCCTCGCGCGTCACATGAGCGCGCGCTACCGCTCATTCAAGCTCGCTCTTCCGAGACGTTTACCGGAGACTGTGTTTATCATTCCAGCGGCTGGGAGAGCCGGAGAGCGCCGCTTGTGTCGCCCACCTTGATCCGGAACAGCGGGTCGGTGGGCGATGATCAGTGATTCAGTGCAACGGATGTGTCCCCCGAGGCCTTGCGCTTGCGTGAGGGGGTGTTCTGGCATTGGTCCGAGTTTTCAGGAAGCCCGTTCGCCGCTGCTCCGGGAAGATAATATGCATCCATTGGTGGTGAGGGTTCCTGAatggaggaaaaggaaaaagcaaCAGTGAATGTTTTCCATAGACTCTTAAAGCAATAAGGCATGAGAGAGCATACATTACAGTTATTTTAGCATGGGTAAAGGTGTTCTTTGGTAAAACACAAAATGGAGTAAAAACCCCTTACACCCATGATATAAATCACTAACGCACCAAAACAATCTGTTTTATagattgtgcttttttttaaagaataaaaatgtccAGCTAATGGGTAGTTCAACAGCTACTGGATTAGATGCTGATATGTACATTAGGGCTGAATTGCATTAAAGTCAGAGAAACCTGAAAAACTGAAACAAGTCTTGAACAGCTTTGCAGGTTTGTAAACAAGAATAAGACAATACTTGATTTTGATGCAAAGcttagaaataagaaatatgttGCAAATATCCTGGAAACTGCATTCACTATTCTGACCTGCATGAGGTAATCAGCAATGTACTCAGGCCTGAGGCATTTAACTCCATAAGCCATGGCCTCAGTCACATCCACTCTGACATCATTTGGTCCCAGCCGGCTGAAGTCTGCGAAGAGATGAGTGGTTTCCTTATACAGAGAGGGAGATGGGCTTGGCAATACCTGTACACAAATGGAGATATGAACTTTTAGAATGCATta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391950 lncRNA upstream 78338 11944030 ~ 11946238 (+) True G330911
TU391946 lncRNA upstream 128685 11895666 ~ 11895891 (+) True G330908
TU391895 lncRNA upstream 150384 11873992 ~ 11874192 (+) True G330869
TU391882 lncRNA upstream 198186 11826139 ~ 11826390 (+) True G330856
TU391617 lncRNA upstream 640914 11383436 ~ 11383662 (+) True G330616
TU392027 lncRNA downstream 107884 12141943 ~ 12142865 (+) True G330976
TU392061 lncRNA downstream 177191 12211250 ~ 12273290 (+) True G331003
TU392238 lncRNA downstream 414703 12448762 ~ 12450347 (+) True G331161
TU392342 lncRNA downstream 676460 12710519 ~ 12712678 (+) False G331263
TU392357 lncRNA downstream 698750 12732809 ~ 12733703 (+) True G331277
XM_026937978.2 mRNA upstream 81068 11900755 ~ 11943508 (+) True vps41
XM_026938296.2 mRNA upstream 280865 11717415 ~ 11743711 (+) False ankha
XM_026938297.2 mRNA upstream 280865 11717498 ~ 11743711 (+) False ankha
XM_026937973.2 mRNA upstream 471359 11488916 ~ 11553217 (+) True fam49bb
XM_026937960.2 mRNA upstream 538271 11391309 ~ 11486305 (+) True asap1b
XM_026937798.2 mRNA downstream 28275 12062334 ~ 12156784 (+) False prkag2a
XM_026937799.2 mRNA downstream 37116 12071175 ~ 12156784 (+) False prkag2a
XM_026937800.2 mRNA downstream 61735 12095794 ~ 12156784 (+) False prkag2a
XM_034297816.1 mRNA downstream 89399 12123458 ~ 12156784 (+) False prkag2a
XM_026938259.2 mRNA downstream 128396 12162455 ~ 12179621 (+) True LOC113541340
TU391847 other upstream 276017 11738158 ~ 11748559 (+) True ankha
XR_003404155.2 other upstream 1040367 10874209 ~ 10984209 (+) False acad11
XR_003404147.2 other downstream 28273 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 672880 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1223835 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 1351142 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 3217576 15251635 ~ 15264587 (+) False si:ch73-173p19.2

Expression Profile