RNA id: TU392238


Basic Information

Item Value
RNA id TU392238
length 1539
lncRNA type intronic
GC content 0.42
exon number 2
gene id G331161
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12448762 ~ 12450347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcgatgcatgccttccttgtaccctgagagatggtgggatcagtcgagcagtgctagaggatcggagggagcgtggtggcgctcgaggtgtgataagtgctttgagataagtgggtgctggtccgtttttggttttgtaggcaagcatcagtgttttaaatctgatgcgggcagctacaggaagccagtggagggagcgcagcaatggggtggtgtgggaaaatttaggaaggttgaaaaccagtcgtgcagctgcattctggatcagttgcagaggacgaatggtgctcagaggcagacctgccaggagtgagttgcagtagtccagtcttgaaatgacaagggactgaacaagcacctgtgtggcctgtgaagaaagaaatggacgaattcttctgatgttataaaggagaaatcgacatgagcgtatgagattagcaatgtgagaggagaaggacagttgattgtccatggttaccccaaggttgcgtgcagtaactgaagacgagatcagagaattattactacaattaattattattaattattattagatcAGAATTTATTACTGAAAGCACTGATGGCATCCCAGAATTTAAATCATCAAGACGATGATGTaacttttttgcatttatttaaggTTTTGATACTCTCCCCCTTGTGCTGTTAGTTTCGGCAGATGTGAACATAAATAATTGTGATCGAGTGTGGGCCAAAACAAAATGCCTGAGAGCATCTGAGCAAGGTGGTCTCGGACCAGTTCCAGCCAAACTCTAGCATGGTTCAAGTGCAGTGGGAAAGTGATTTGCCCCTGCACTGACATGAAGTGCGTATTGTGTAATTTGGGTTGAAGATAGCATTTCTGGAgatgagccaaaggacagaacTGAAGAGCTGCAAGGATACCATGTGTTCTGCGTATTAATTCCACggaacaaagagagaaaataaacagtggaTGCATACCTAGATTTTTCCAAATTagttatttaaaacatttggtatgtatgtttaaatatatacataatgcTGTTATACGTGTACTGCGACTATAACGCATACTGCCATTTCCCATCACCTGCCGCACTATACACACACGGCGAAGCTGTCATATAACTCTCCTATTAGCACAACACGCAGTCACCTTGTAATTAACCATattgagagaaaatgaagacTCTAACCAGACTCGAATGATGTCTTTTACATGGGACAGCTTTGTGGTCTGACAAAAGATCTGACTTGCAGACCTTTTATTAAGGTGTGTTAGAAGAGCATAATAATCCTATACTTCTGTTTCCCTGTATTATTGCAGTTAACTAACACAGTAACTCaccatatgttattatattacattagctCGCACTTTTTAGGCTAGTTAGTTTCCAGGGAACTCAAACATGGGACTAAAcaacacactggagcttttactcgCCCAATGGGATAggtaataaatttatgatttgtccatgCTTGCCATATGTAGGAATGTTGCTTTCTTTGAGACATGTAAAGCTGTCACACCTTTTTGgcctgag

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko04668 TNF signaling pathway
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392061 lncRNA upstream 175472 12211250 ~ 12273290 (+) True G331003
TU392027 lncRNA upstream 305897 12141943 ~ 12142865 (+) True G330976
TU392006 lncRNA upstream 414703 12024576 ~ 12034059 (+) True G330962
TU391950 lncRNA upstream 502524 11944030 ~ 11946238 (+) True G330911
TU391946 lncRNA upstream 552871 11895666 ~ 11895891 (+) True G330908
TU392342 lncRNA downstream 260172 12710519 ~ 12712678 (+) False G331263
TU392357 lncRNA downstream 282462 12732809 ~ 12733703 (+) True G331277
TU392360 lncRNA downstream 290770 12741117 ~ 12741678 (+) True G331280
XR_003404159.2 lncRNA downstream 347014 12797361 ~ 12802125 (+) True LOC113541232
TU392425 lncRNA downstream 593968 13044315 ~ 13049452 (+) True G331342
XM_026938147.2 mRNA upstream 214579 12181785 ~ 12234183 (+) True bcl2a
XM_026938259.2 mRNA upstream 269141 12162455 ~ 12179621 (+) True LOC113541340
XM_026937798.2 mRNA upstream 291978 12062334 ~ 12156784 (+) False prkag2a
XM_026938277.2 mRNA downstream 256592 12706939 ~ 12708003 (+) True LOC113541349
XM_034298168.1 mRNA downstream 260279 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938097.2 mRNA downstream 316213 12766560 ~ 13015109 (+) True LOC113541231
XM_026938128.2 mRNA downstream 570820 13021167 ~ 13042516 (+) True cul1b
XM_026937922.2 mRNA downstream 824313 13274660 ~ 13278025 (+) True skida1
XR_003404147.2 other upstream 291975 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 700203 11738158 ~ 11748559 (+) True ankha
XR_004576968.1 other upstream 1465547 10874209 ~ 10983215 (+) False acad11
TU392341 other downstream 256592 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 807547 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 934854 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 2801288 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 3115828 15566175 ~ 15566663 (+) True G332636

Expression Profile