RNA id: TU392341


Basic Information

Item Value
RNA id TU392341
length 1550
RNA type TUCP
GC content 0.39
exon number 8
gene id G331263
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12706939 ~ 12712678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTCAGAAGGAATAGAGAACAGTTGAGAAAGTGCAGACTAACACAGCAGTGATGAGGAACCCGGCTGCCATAGTTGCCATTGCCTTTACCATCTGGATCGCAACAGATGCCGAAAAAGTGAGTCCCTGCTGTGTTGCTGTCTCCCGGTACATGGAGGACGTTACCATCACAGGTTACAGATTACAGGAGAAAAACCTTCCATGCATTAAAGCTGTTGTttttcaGACAGAAAGGGGACAGTTCTGCATTGATCCATATCAGCCCTGGGTGAAGAAGAAGATCATTGAGTTTAGGAGGtcacaaaagaacaaaatgtctcCAACCTCTGCCTCACTGCATCTGACCTCAGCACCACGCGATTCAACTGCTAGCACTCAGAGGTAATAAAAGAGAAGCATCCTCACAGTTACCAACCAGTAGCTGACTGAAACCAACCCACTGAAAGATCTACCCACTGAGAACCATGCTGGATTGCAGTAAAAACTGGCACACTTTTTTGGTTGTGCTGCTTGCACTTTTTGGATGCATCACCGCTGCACCTGGTAACTATCGTCGACCTACCAAAGTTGGTCTCGTGTGCTGTGAGGCAGTCTCCAAAGCAGTTATACCACCTTCTATAAAGCTCACTGCATACAAGCGCCAGAATGCCCTGAAACCTTGTGTGGAAGCTGTCATATTTTTCTCagagaatgaaaaatattgCTCTGACCCTGCTGCACGCTGGATCccaaagaaaatgaaagGTTTGACAGAGATCAAGGAATGAAAATGCCAGACAAATCGTTTGCAGCCACCTTCCTTTTtgcctgcaatattttttacatacattaaaagcaaaaaataaaaattaaaaaaaaaaataataatattaataaataaatatgttgcATTACTTCAAACAGTTTTACATACAATGCAAGGTAGAATGTAGACCGTTTTGCATGACTTAATGTACACCTACGTAGTGCTAGGAACCATTATGCTCCAAGGTCAGGTTTTACTATGACTGTAAGCTTTGCTGTAACCCTTTGTATcgctttattttaatgtgcttcCACCAGTTTAATATAGTCGACAGTTTAAATACTGTGAACTCTTAAAGCTACTtgattaatgaaaataatgatgCATAGTAGTACGGTTCACCTTTAAAATTTCATAGTTTTTGAAAAAGGACATATGTGCTTACTTTAATACAAGTGTACTGAATTCTTAGAAGCCTCAAGGCTTCTTTGTTGTTCCTCTATGTAAACTCCTACAAATGAGTGTTTTTCTATCAGTAACGATCCCAAGTAGAATGCTACTTTCACACGTAATCGATCTTGCTTCAGTAAGTCCAGAGAGAGTTGACGAGTGTTTGCTTTACCTAGGTAGTAAGCAACACCTACTGAAACTGACGTATAATATCTGTGTcatatattgcaatatttgtaatatttgcaGAATATTTTATAAGCAATGTCTGCATTTTCACCAATGAAACAGTCTACATAATAAAACACCATtaccttgcaaaaaaaaatattttttttctccttgcgCTTCAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392238 lncRNA upstream 256592 12448762 ~ 12450347 (+) True G331161
TU392061 lncRNA upstream 433649 12211250 ~ 12273290 (+) True G331003
TU392027 lncRNA upstream 564074 12141943 ~ 12142865 (+) True G330976
TU392006 lncRNA upstream 672880 12024576 ~ 12034059 (+) True G330962
TU391950 lncRNA upstream 760701 11944030 ~ 11946238 (+) True G330911
TU392357 lncRNA downstream 20131 12732809 ~ 12733703 (+) True G331277
TU392360 lncRNA downstream 28439 12741117 ~ 12741678 (+) True G331280
XR_003404159.2 lncRNA downstream 84683 12797361 ~ 12802125 (+) True LOC113541232
TU392425 lncRNA downstream 331637 13044315 ~ 13049452 (+) True G331342
TU392426 lncRNA downstream 338364 13051042 ~ 13051859 (+) True G331343
XM_026938086.2 mRNA upstream 207893 12428457 ~ 12499046 (+) True hs6st1b
XM_026938147.2 mRNA upstream 472756 12181785 ~ 12234183 (+) True bcl2a
XM_026938259.2 mRNA upstream 527318 12162455 ~ 12179621 (+) True LOC113541340
XM_026937798.2 mRNA upstream 550155 12062334 ~ 12156784 (+) False prkag2a
XM_026937799.2 mRNA upstream 550155 12071175 ~ 12156784 (+) False prkag2a
XM_026938097.2 mRNA downstream 53882 12766560 ~ 13015109 (+) True LOC113541231
XM_026938128.2 mRNA downstream 308489 13021167 ~ 13042516 (+) True cul1b
XM_026937922.2 mRNA downstream 561982 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 609659 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 623660 13336338 ~ 13341661 (+) True msrb2
XR_003404147.2 other upstream 550152 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 958380 11738158 ~ 11748559 (+) True ankha
XR_003404155.2 other upstream 1722730 10874209 ~ 10984209 (+) False acad11
TU392569 other downstream 545216 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 672523 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 2538957 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2853497 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 4394794 17107472 ~ 17110027 (+) False hhatlb

Expression Profile