RNA id: TU392351


Basic Information

Item Value
RNA id TU392351
length 530
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC113541288
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12676545 ~ 12677938 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGTGTGTAGGGGGAGATGGAAATGAAAGTTATGAAATGTGTAGTGTTAATCAGAATCTCTCCAGTCAGCACTCAGCTTCACAATGAATTTGTTCTATGTACTCTTTGTCTGCATGATGTCCTGTCTCTGTGGCAGCGAAGCAGTGAGTTGGCCCAGCTTTTGCtgcttgaaaaaaaattcaatcaaaGGACTGCCTGTGAAAAATGTTGCAGATTGTAAAGTCCAGAGTGCAGGACTTTGCCCCTTTGATGCAATCATTATCAAGACACATAAAGACCGGAACTTCTGTTTGGATCCAAAGGCAGAGTGggttattaaaaatgttgtgATGAAGGGAACCGACTCTTGTGACATGAAGAGACGAAAGAAGAGCAGGGGAGGGAAAAGGGattgcatttatcatttttgtttggaCAACAAAACACTTGTGAGATGTATTTGTCTTGACTGCAGAAAATCCATGTTTCCTTTTTACCCTTTTCTTGTCCATTACTGACATACTTTGAAGGAGACTGATGCCTCTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392265 lncRNA downstream 174279 12501959 ~ 12502302 (-) True G331188
TU392207 lncRNA downstream 461330 12214363 ~ 12215251 (-) True G331142
TU392188 lncRNA downstream 521947 12151366 ~ 12154634 (-) True G331123
TU392187 lncRNA downstream 526077 12149591 ~ 12150504 (-) True G331122
TU392167 lncRNA downstream 580141 12095120 ~ 12096440 (-) False LOC117595757
TU392354 lncRNA upstream 14027 12691960 ~ 12693710 (-) True G331274
XR_004576954.1 lncRNA upstream 331995 13009928 ~ 13021871 (-) True LOC117595777
TU392499 lncRNA upstream 334919 13012852 ~ 13018804 (-) True G331415
TU392507 lncRNA upstream 387880 13065813 ~ 13066670 (-) True G331423
TU392617 lncRNA upstream 483759 13161692 ~ 13198744 (-) True G331516
XM_026938058.2 mRNA downstream 22472 12569775 ~ 12654109 (-) True ek1
XM_034298061.1 mRNA downstream 619154 12032654 ~ 12057427 (-) False topbp1
XM_026938282.2 mRNA upstream 366390 13044323 ~ 13061701 (-) True ezh2
XM_026938089.2 mRNA upstream 389317 13067250 ~ 13077326 (-) True pdia4
XM_034297840.1 mRNA upstream 402172 13080105 ~ 13129036 (-) True LOC113541106
XM_026938227.2 mRNA upstream 461724 13139657 ~ 13152923 (-) True LOC113541320
XM_026937945.2 mRNA upstream 509976 13187909 ~ 13258145 (-) True mllt10
TU391338 other downstream 1593430 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 1745806 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 2153318 10522732 ~ 10523263 (-) True G330185
XR_003404173.1 other downstream 2391644 10284834 ~ 10284937 (-) True LOC113541360
TU389089 other downstream 5290275 7378780 ~ 7386306 (-) False sec61b
XR_003404167.2 other upstream 2258953 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 2287880 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 4152763 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 4152763 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 4438165 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile