RNA id: TU392354


Basic Information

Item Value
RNA id TU392354
length 1279
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G331274
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12691960 ~ 12693710 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGTGCCTGCGGTAGGAAGCTTTGaagcatttttttcctgtcctGAGCATGTATAAATTAATACTTGGTGGTCGTTATTGTATTTCACTGATCAGTCTGATACGGATGAAGAGATGAGAACTGCACTGTTGTGTCTATTTGCTGTGCTGCTCACAGCCACCATCTGCAAATCAACTGCAAATCCATGTGTCTGTATCAAGATAGGAAATGTAAGTCTTCCTGCCTCAAGAATAAAAAATTACTATGTGCAGCAATCAGGCCTCTGCCACATTACAGCTGTTGTattcaagACTGTGAAAGGACGTACAGTGTGTGCAGACCCAAAGAATCCCTGGGCTATTAAAGCCATGGAATTAGTGGATGCCAGAAGGAGGACTGGTTCCACAACAGCAAGTCCTGTATCTACTGCCTCTGAGCGCACAGTGATTACAACAGGTGGTTTATACAACATAAGCTAAAGCGCTCCACAGAATCAGAATACCTGTTATTTGTTATGTGTGATCATTGCCTggaatgtatttaatgtttaatctcTGTGGTAGCATAGTCTGAAAGAAGTAGAATACACCTCTGTATTCAGCAGTTGTATGTATTTAGACAATTACTGTCTTGagcattttacacacaattaaaaTGTGCCAGTTGCCGAGAATTCAGCTTTCTGTTGTTGAATGTTCCcctatgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgggtttgggGACGAGAAGGGTGGACTGTGTGAGAACTATTGCCCTGTCACTTTAGGTGGAGTATTTAAACATGGAAGGTTGAGCATAAGTGGAGGTTCAGCACTGAGTAGTACATTGGGGAGCTCCCCAGCATACCCACAATGCTCTCATCCTACTAATCAAGCTCTGTCTCACCTGATGCATATTCATAACAAAAACATCAGACGTACAGTATATGGTAGCTGGTTTCATAAAAGTGGAGTAGTTCCCCGTTCTAATTtttggtgtgaacattaactgaagcgcttgacctgtatctgcatgatttttctttcattgagctgctgccacatgattggctaattagcTAAATGTGCAGTGCAGTTGTAcaaatgttcctaataaagtggatgattggTGTATTTAGATATGTGAATGTCTATTTTGGATCTTCCATGCAAGAAGGACACAATACGTGTTACATAAAAAGAGAATGAATAAAGGAAGAAATGCAAGTTATTGTGAACTTTAGAGCAGACAAAAGCATAGCTAAATTAAGCAGCATCTCAATTTGCA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392265 lncRNA downstream 189658 12501959 ~ 12502302 (-) True G331188
TU392207 lncRNA downstream 476709 12214363 ~ 12215251 (-) True G331142
TU392188 lncRNA downstream 537326 12151366 ~ 12154634 (-) True G331123
TU392187 lncRNA downstream 541456 12149591 ~ 12150504 (-) True G331122
XR_004576934.1 lncRNA downstream 567160 12088387 ~ 12124800 (-) True LOC117595757
XR_004576954.1 lncRNA upstream 316218 13009928 ~ 13021871 (-) True LOC117595777
TU392499 lncRNA upstream 319142 13012852 ~ 13018804 (-) True G331415
TU392507 lncRNA upstream 372103 13065813 ~ 13066670 (-) True G331423
TU392617 lncRNA upstream 467982 13161692 ~ 13198744 (-) True G331516
TU392643 lncRNA upstream 557303 13251013 ~ 13251562 (-) True G331534
XM_034298166.1 mRNA downstream 14022 12676545 ~ 12677938 (-) False LOC113541288
XM_026938178.2 mRNA downstream 14025 12676545 ~ 12677935 (-) True LOC113541288
XM_026938058.2 mRNA downstream 37851 12569775 ~ 12654109 (-) True ek1
XM_034298061.1 mRNA downstream 634533 12032654 ~ 12057427 (-) False topbp1
XM_034298060.1 mRNA downstream 634533 12032655 ~ 12057427 (-) False topbp1
XM_026938282.2 mRNA upstream 350613 13044323 ~ 13061701 (-) True ezh2
XM_026938089.2 mRNA upstream 373540 13067250 ~ 13077326 (-) True pdia4
XM_034297840.1 mRNA upstream 386395 13080105 ~ 13129036 (-) True LOC113541106
XM_026938227.2 mRNA upstream 445947 13139657 ~ 13152923 (-) True LOC113541320
XM_026937945.2 mRNA upstream 494199 13187909 ~ 13258145 (-) True mllt10
TU392350 other downstream 14027 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 14027 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 1608809 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 1761185 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 2168697 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 2243176 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 2272103 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 4136986 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 4136986 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 4422388 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile