RNA id: TU392357


Basic Information

Item Value
RNA id TU392357
length 895
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G331277
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12732809 ~ 12733703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttggatgcagctgccaataggcccagcagtctctgaaactgctttacagtgagtgaccggcctactttcactctcgcgaccactgtgaggaccgactcgatccgagcaggagacaaacgtgcctgcatcgtggtcgaatcccacacgacgcctagataagcggttctctgagctggagaaagcacgcttttctcggcgtttagtcttaaccccagttccttcatatgggcgagaacggcatctcgatgccgagccgccatctgctctgaatgagctaaaatcaaccagtcgtcgatatagttcagtatgcggatgccccgtagtcgcataggagccagggcagcatccacgcacttcgtgaaggtgcggggtgagagtgctaggccgaagggaagaacccgatactggtaagcttcgcccccgaaagcgaacctcaggaacttcctgagcgggggaaggatggagatgtggaaatacgcatcttttaggtcgatcgtgacgaaccagtcctcggacctgatctgagacacgacctgagtgaccgtaagcatcctgaacttcagtcgagcgactgagaggttcaattgccgcaagtccaaaatgggacgcagccctccccccttcttgggaacaatgaagtaccggctgtagaaccctgactccctgtcgtgaggagggaccacctcgatggcctccttcctcaggagagtacgtacttcctgctccaataccagagcctgctcgggacccaccacagtgggaagaaccccagaaaaacgaggtggaggcgagccgaactgaattcggtagcctctttctacagtacgcaggacccaatgagacacattcggcagaagtttccacgctgccagaaagctcactaagggaatcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392342 lncRNA upstream 20131 12710519 ~ 12712678 (+) False G331263
TU392238 lncRNA upstream 282462 12448762 ~ 12450347 (+) True G331161
TU392061 lncRNA upstream 459519 12211250 ~ 12273290 (+) True G331003
TU392027 lncRNA upstream 589944 12141943 ~ 12142865 (+) True G330976
TU392006 lncRNA upstream 698750 12024576 ~ 12034059 (+) True G330962
TU392360 lncRNA downstream 7414 12741117 ~ 12741678 (+) True G331280
XR_003404159.2 lncRNA downstream 63658 12797361 ~ 12802125 (+) True LOC113541232
TU392425 lncRNA downstream 310612 13044315 ~ 13049452 (+) True G331342
TU392426 lncRNA downstream 317339 13051042 ~ 13051859 (+) True G331343
TU392427 lncRNA downstream 320582 13054285 ~ 13054519 (+) True G331344
XM_034298168.1 mRNA upstream 20158 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 24806 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 233763 12428457 ~ 12499046 (+) True hs6st1b
XM_026938147.2 mRNA upstream 498626 12181785 ~ 12234183 (+) True bcl2a
XM_026938259.2 mRNA upstream 553188 12162455 ~ 12179621 (+) True LOC113541340
XM_026938097.2 mRNA downstream 32857 12766560 ~ 13015109 (+) True LOC113541231
XM_026938128.2 mRNA downstream 287464 13021167 ~ 13042516 (+) True cul1b
XM_026937922.2 mRNA downstream 540957 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 588634 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 602635 13336338 ~ 13341661 (+) True msrb2
TU392341 other upstream 20131 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 576022 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 984250 11738158 ~ 11748559 (+) True ankha
XR_004576968.1 other upstream 1749594 10874209 ~ 10983215 (+) False acad11
TU392569 other downstream 524191 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 651498 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 2517932 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2832472 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 4373769 17107472 ~ 17110027 (+) False hhatlb

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU127345 True 230 lncRNA 0.40 2 NC_048566.1 9006265 ~ 9006563 (-)
tiger barb (Puntius tetrazona) TU127345 True 754 lncRNA 0.51 1 NC_056710.1 6521826 ~ 6522579 (-)