RNA id: TU392425


Basic Information

Item Value
RNA id TU392425
length 5138
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G331342
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13044315 ~ 13049452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGAGCTTattttagttttctttattaCTTTCAACAATATTATCTGTAAACATTACAAATCAGCACCTTGTACAatcagaggcagagagaaacagagtggtCACAAACCCTCAGGGAAAGAAAAACGACTGAAAGACTGAATGTCTCAGGAGAAACATGCTGGTGAGGAGCTATCAAACTCGCACTGAGAAAACCATCAGAATTTTACTTGGCAAATCACAGCaaagtttttaataaattacagaaaagccAAACCTGCTTTCAGAGTCTGCGAATATAAATAGCGACAGTTAAAGATCTTCACATGAAggtgatttgaagctgatctTATTGCTATGGTTTTATCACAACTTCTAATATACAGCTGGACTGCATTTCATGGGTCATCCAACATGTTTGGACATGTTTTAGCTGGAAAATTCCTGCACCTATGGTGTGGTATTTAagtacctatttttttttttttttttatttatacagaacCACCATACAGCGTTGACATCACACCATTGGATTAGCACCATTCACCTTTCATTCTCCAAAAAACAGTTTCCAGTAACCCTTAAAATTAAGGGTTGcataataatcattaatcacttattacactgttacattATTAATTACCATCACTGATCTAGTCCAGAGGGTTTCCAACGTTTTGGAGGCAGGgacattattaaaatgtgtacaataatattctgccTATTTATTAGAggcatagagctttttattcctcagCTTCCTACTGAATAGCACATTAGGTTcaagttgatattatttataggaCTTCTTTTGCTTTTGAATTACTGAGGTTTAAACTAAACCCATTCAATTAAAGTgtccagtcaaacaggctaataaaagcttcataataaatataagaactTTCATAATGGTAGGTTGTCATTTccaacactaaaaaaaaataaaaatcacagaccccctggctatgcaTCTCAGACCGCACTGACAACCTGTATGCTAGTCACTGTTACTACATCTCAGTACAAGCAGTAGATTAAGTATTTACCAATGAAACTAAGAGGGCTATTCCATCAGTTAACAGTGACTTCGTAGCTCATTGCTAAATTTTTAATCTATTACTTTAAATTCCCTAAAGTGATATTGAAATTTTCCTCACATCTcagcagctataaaaaaaaatatctgagcAGAGAAGCAAATGCTAGTGCTAGTCATGCCCTAatgcacagagagaaaaagaacaaatgatATAAACCACTAGCATTCAAACCATCAGGACAAAGAAGTGTCTCTTGCACTGCCTTAGCATTCAGCCATTCTAGCCTAGGCATGTGGTCTGGAGGAAACACTGAAAGGGGGTTGACTAGAGCTTTAAAGAAAAGGTGAACAAGACATCAGTTATATATAAAGTCGATGATTTAAGAgtataataaatcattaatcCATGCTCAAACATAGCAGCCAATttctttgagaaaaaaaaaaatacactgaattATTAGGAAAAGGTTGTTGAGAATAATCGAGCATGTTATCGACTGACTTGTGCTCTTGATtatgtgataataataataataataataataataataataataataaacactgtgccAGTACATATTGGATGACCCAATATTTAACGACAGGAAGACCTTACTGACTGTCCAAACTTTTCCTACCTACAGTGATGGTCTGGCAAAAAGCTGCTCAAAGATGTAGAGATttctaaaataacaaaaacaaacactgaaaagTTCCCTGATTCTGATTTCTACTCCATTTGAAATCTTTGTTCATGCATACAACAAACTCAATACACAATCACCAACATTTTAGGACACCTAAACAATTCAGTGTAATTTCAAGGCACCGCAAGTTAGATACTGTATCTATTcatgtttttgtccttttttttttttttttttaaatacttactttttttcatttattttacagaaactgGATGCATTGGCACTCCAGAAAGTACATGATACCTCTGCAGATGCTTGTGATGACAGACAAGCAGAGAAAGTGACTTTGGTTTTCATATGGATCAAAAACACCTCAACTTGATGAAGACTGTTGTAGCATAGTGAGACTCCGGTTTATTAGGCAGGGCTGATTTATACTGATACATCAAGATGCACATAAGCATATGTGTGAAAGGGTTTATGGGTAATGTGTAGTTTGAAAATGCTGACTACTCGTCGTGTGAATCTGCAGTGCTGGGAGTcaggaacaggaagtgtatCTAGTAGCACTGAGACAAGACTCAAACCAGAAGCAAAGCAGAGCAGTTCGAGGTCGGGTTAACGCGAGGCGTACAACGTTAAACGCACTTGCACCACAATGCTGTTGCATTctcgaatctgactggtcagaagtgggttgattaaatttctataacagcagttcccAGAGCAGtaccagctgtaattcaaatcagagGTATATAAttatgcacttgttctaatacatcatTTCTCTAGTAATGACTCATTAACAGGGACATGCATGGTGATCTCTCCAcaagataataataaacagattattacAGTCATAATAATTTACTGTTGATGCATAATctttaatatggtgaagttttctgtaaggagacattaatgtaacatttaaggaagggtGTCTCACGTTTTGTGACAGTCAGTAGGTGTTTTtttgggaaagtcttcagtacagAGGACTTTacactttccggtttctcggtaacgacTAGCTgtgattttgtcttattactttAACAGGCTGGCAATggtactactgtttatagctgctgtaacataattgataacaggaactaacttatgtGGTTCCACAACAATTGACAAAtaacatgtaaatataaaagattaaatgtacAACGTGCtgcaaaacaattaaaaatgttaattgcTAGCAAACTGCagtggtattagaggaataaaacactctgggatatgctattattggaaaataatcaactccagagTAGTAACAGTAAATCCTCTTTATGTCATGCAGCATTACACCAccccagtgttgattatttcctataacagcacctctcCAAGTGTTGTATATCCTACTTACATGACCATCgacaaattattacaaaataagaTCTGTAACAGTgaatggggttttttttggacatGCACCACTGACCGTGGGTGCACACGCTCAAATGTTTGCAGTTTTGCAAACCCAGTATAAATCAGCCCATATACAGATCtagtacctaataaactggtgCTGAACCTGTGGTTTATTGTCAGTTTGGTCCAAAGGTTGAAAGACATCAACTGCTTgcaatttatataaaaaaaaaaataaaaaaaaacctataataAAAAGTTCGGAACgctggaaaaacaaacagccCATTAGACAGTGACGGATCTCTACTAAACTTGAAGCTGTAAACAAGTGAATATTCAAGTTACTGTCAAAAAGTGAATTCCCAGAGTAAGCCTGTTGGTCATGAAAAATAATGACAGAAAAGACTGAAGTGTAAAAAGTACTAGAAATATCCAAGTAGGCAGATCACCTTGTCCTATAAAAAACAGTATTGAAACGTATTGAAACGGCATGTGGAGAGAAAATTCCTGAAGAGTGTAAGGCATTTGTTCCAGAGGTAGACCGATTCATGGAATTTCCATTTCACGTTCGATGCCCACGTACTTGAGAGCATCGGCTTGACTGTAtctaaaagaaagaagaagggaaaaaaaaaaaaaaacatgcagtgtaaaataatgtataagCTGAGAATGAACAACataaatatattgcatttttttccccccataaaAAGATTTGTTTATGTAGTGTGGTGAGACATTCCATATGCAGGTTTTCACATAAAAGTTTTCTTTCATTGCTTTAAAAGTTAAGAGTCACCGTCATTAGCTTGTGCATGTATTACCAGCATTACTTGAAGAATCGTTAGCCAAGTTACCCAAGTAAATTTCTCtgcaaacattagctagctgtaTTAGCTTGTTGGATTAGCCTATTCAGAGAAGGTTTTTTTAGTTAATGCCTATTGGATGCTACACAAGTTCAAAACCTCAGAACTACTGTACCATTTAATACACAAATTTTCAACAGTATTTTGCTGTTTTACGAACGTTGAAGTGCACACTACACAAGCAATCGCAGATGAGGCTCACATGCTACACAAACTTTTACTTAGAGAGATTCCTCTCTAATTTTAGAAGCACATCTGAAATCCAAATCCTGCATTCTCATGCGAATAAACTTGTGGGCTCTCTACCATGAGACTTCGTCAAGAGTAACTTGTTATGATGGTTGTTTCTGCAACATTTTCtgaagaaataagaaaacaaagagaaataacaaaaatgtggAGGGAAGATTGGTTGGTTGCATTTAGGCAGCAAGGactgtctgttctgcaaagagaactggaggtatagTAAATAGAAATGTTGCTCTTTTGTACTGTTCGTCATCACGAATCATGTGGTGGTCGTTTATATTTctgctgttcctaataaaccGTTTGGGCATGACATGCTAAATAATTTCTTATAGAAGCATTGTTATTGTGCTATATGTAGTGTGCATTCAGCATAAGCAGGCAAGGCAGCACCGTTATATATAAAAGTTCTAATATGTAGATCTATCATTTTAGTGGCACCAGAAATACTCGTTTGGAACATGTGAACAGCTTCCTGCTGAGTGATCACAGAGAGTGTGATAATCATTTTAAGTATCCACGATAGCTGATTGGGACAAGAATAAAAAGCgtaaagaaaaaagtcaaagcTGGCCAACACTTACCTGTAGTCAAAGAAAAGCTCCTCCCCGGTTTGTATGGCTCTCTTGGCAAAAATGCCTATTCGGTGATCCCCATTAACCATCATAACTAAAaagtaaaagggaaaaaaaaaaaacaatgaggcTAGATCAGCTTTACTGTTTACCATCAAAGAAACAGCCAAGACATGCCTGATGTCTTACTTTTGGTTCTTTAATTTCACAAGCACatagcattgtgcaaactgcatgtctaaatcaGCACACACTAGCCTTTAAAACATTTGGCTCAGTATTTTGTACACAAATGGTTCCATAATCAAATTGAAATCATATCATCCACCTCATCCATCACGCTCTACCCAGGTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404159.2 lncRNA upstream 242190 12797361 ~ 12802125 (+) True LOC113541232
TU392360 lncRNA upstream 302637 12741117 ~ 12741678 (+) True G331280
TU392357 lncRNA upstream 310612 12732809 ~ 12733703 (+) True G331277
TU392342 lncRNA upstream 331637 12710519 ~ 12712678 (+) False G331263
TU392238 lncRNA upstream 593968 12448762 ~ 12450347 (+) True G331161
TU392426 lncRNA downstream 1590 13051042 ~ 13051859 (+) True G331343
TU392427 lncRNA downstream 4833 13054285 ~ 13054519 (+) True G331344
TU392428 lncRNA downstream 7066 13056518 ~ 13057241 (+) True G331345
TU392432 lncRNA downstream 11883 13061335 ~ 13061659 (+) True G331348
TU392433 lncRNA downstream 15251 13064703 ~ 13065447 (+) True G331349
XM_026938128.2 mRNA upstream 1799 13021167 ~ 13042516 (+) True cul1b
XM_026938097.2 mRNA upstream 29206 12766560 ~ 13015109 (+) True LOC113541231
XM_034298168.1 mRNA upstream 331664 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 336312 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 545269 12428457 ~ 12499046 (+) True hs6st1b
XM_026937922.2 mRNA downstream 225208 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 272885 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 286886 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 294294 13343746 ~ 13350216 (+) True c8g
XM_026938162.2 mRNA downstream 324112 13373564 ~ 13379652 (+) True klhl15
TU392341 other upstream 331637 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 887528 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1295756 11738158 ~ 11748559 (+) True ankha
XR_004576969.1 other upstream 2061100 10874209 ~ 10983215 (+) False acad11
TU392569 other downstream 208442 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 335749 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 2202183 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2516723 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 4058020 17107472 ~ 17110027 (+) False hhatlb

Expression Profile