RNA id: TU392569



Basic Information


Item Value
RNA id TU392569
length 400
RNA type TUCP
GC content 0.45
exon number 2
gene id G331476
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13257894 ~ 13258416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AATTGAAGTGACCTTAATATCGTTGTTTTTTGATGTAGAGGAAGTGATTAAAAATGGAGTGGTGGTGTTGTACCTTGATGCACGGCGACATTACAGCCGTGACCGTCGCAGTAAACCAGCGGGTTTTCGGCCCAGCCTCTCTCATCAGAGCAAACACAGCAACCTCCGATCATCTCCTTCATATTAGCGGCCAAGTAGTGGCTAAATACCAtctacaaacagaaacaaagtccCCAAACGTTTATATCGAGTCCTCGTCACGAATATCCAAGATCCATTTGGATGAAAAGTCCATATTTAATGTCGTCTCCTTCACATTAGCGTCCGAAGGAGTCGCAGGATCCCGTCAAgaaaaaggtggaaaaaaagacGCCCAAAACGACCTAAAAGCGCgatgtgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU392525 lncRNA upstream 67939 13187836 ~ 13189955 (+) True G331441
TU392433 lncRNA upstream 192447 13064703 ~ 13065447 (+) True G331349
TU392432 lncRNA upstream 196235 13061335 ~ 13061659 (+) True G331348
TU392428 lncRNA upstream 200653 13056518 ~ 13057241 (+) True G331345
TU392427 lncRNA upstream 203375 13054285 ~ 13054519 (+) True G331344
XR_004576956.1 lncRNA downstream 40 13258456 ~ 13260558 (+) True LOC117595778
XR_004576955.1 lncRNA downstream 226 13258642 ~ 13260558 (+) False LOC117595778
TU392573 lncRNA downstream 5933 13264349 ~ 13264586 (+) True G331480
TU392575 lncRNA downstream 11011 13269427 ~ 13269642 (+) True G331482
TU392579 lncRNA downstream 15327 13273743 ~ 13274041 (+) True G331486
XM_026938128.2 mRNA upstream 215378 13021167 ~ 13042516 (+) True cul1b
XM_026938097.2 mRNA upstream 242785 12766560 ~ 13015109 (+) True LOC113541231
XM_034298168.1 mRNA upstream 545243 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 549891 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 758848 12428457 ~ 12499046 (+) True hs6st1b
XM_026937922.2 mRNA downstream 16244 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 63921 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 77922 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 85330 13343746 ~ 13350216 (+) True c8g
XM_026938162.2 mRNA downstream 115148 13373564 ~ 13379652 (+) True klhl15
TU392341 other upstream 545216 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1101107 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1509335 11738158 ~ 11748559 (+) True ankha
XR_004576968.1 other upstream 2274679 10874209 ~ 10983215 (+) False acad11
trnat-agu_17 other downstream 126785 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1993219 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2307759 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3849056 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3849056 17107472 ~ 17110027 (+) False hhatlb

Expression Profile