RNA id: TU392575


Basic Information

Item Value
RNA id TU392575
length 216
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G331482
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13269427 ~ 13269642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGGCGCACAGGGAGGGGTTAAAGGGGGAATTTGCCTATGGCACGAGCTCGGCTTTTACGCAAAGACTTGTGGGTAACGCAGGGGCGCTCGCGCGCTtgcatgcacacatatacacaatagAAGTAACACACGACATGGCAGGGTGAAAGGTTACGGCCGCCCACCCCCAAccgtctctttttctttctgtctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392573 lncRNA upstream 4841 13264349 ~ 13264586 (+) True G331480
XR_004576956.1 lncRNA upstream 8869 13258456 ~ 13260558 (+) True LOC117595778
XR_004576955.1 lncRNA upstream 8869 13258642 ~ 13260558 (+) False LOC117595778
TU392525 lncRNA upstream 79472 13187836 ~ 13189955 (+) True G331441
TU392433 lncRNA upstream 203980 13064703 ~ 13065447 (+) True G331349
TU392579 lncRNA downstream 4101 13273743 ~ 13274041 (+) True G331486
TU392580 lncRNA downstream 4485 13274127 ~ 13274411 (+) True G331487
TU392561 lncRNA downstream 17805 13287447 ~ 13290399 (+) True G331468
TU392595 lncRNA downstream 90638 13360280 ~ 13361018 (+) True G331498
TU392593 lncRNA downstream 91727 13361369 ~ 13362702 (+) True G331496
XM_026938128.2 mRNA upstream 226911 13021167 ~ 13042516 (+) True cul1b
XM_026938097.2 mRNA upstream 254318 12766560 ~ 13015109 (+) True LOC113541231
XM_034298168.1 mRNA upstream 556776 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 561424 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 770381 12428457 ~ 12499046 (+) True hs6st1b
XM_026937922.2 mRNA downstream 5018 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 52695 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 66696 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 74104 13343746 ~ 13350216 (+) True c8g
XM_026938162.2 mRNA downstream 103922 13373564 ~ 13379652 (+) True klhl15
TU392569 other upstream 11011 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 556749 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1112640 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1520868 11738158 ~ 11748559 (+) True ankha
TU391206 other upstream 2294512 10973264 ~ 10974915 (+) True G330257
trnat-agu_17 other downstream 115559 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1981993 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2296533 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3837830 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3837830 17107472 ~ 17110027 (+) False hhatlb

Expression Profile