RNA id: TU392580


Basic Information

Item Value
RNA id TU392580
length 285
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G331487
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13274127 ~ 13274411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATCTTAACGACGAAGTTCAGTGCGACTTTACACATTCTCCtgctaatatttaaaatatcgAAAAACCGTGTCCAAGTCCAATCCAGCTTTTTAACCGAGTAACACAGGACAGGCTTTCTACAGCTTCGTCTTTTACATCATCTCAATTCTGctgtttttacaaaataaaatggtgATTTGCaaacttgtattaaaaatatgactAACATGGtgaattgtattaaaaaaatcatgcgTAAAAAATTCCAGGGGTGTTATTGTCCAAATGACAGTAGAAGGCGTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392579 lncRNA upstream 86 13273743 ~ 13274041 (+) True G331486
TU392575 lncRNA upstream 4485 13269427 ~ 13269642 (+) True G331482
TU392573 lncRNA upstream 9541 13264349 ~ 13264586 (+) True G331480
XR_004576956.1 lncRNA upstream 13569 13258456 ~ 13260558 (+) True LOC117595778
XR_004576955.1 lncRNA upstream 13569 13258642 ~ 13260558 (+) False LOC117595778
TU392561 lncRNA downstream 13036 13287447 ~ 13290399 (+) True G331468
TU392595 lncRNA downstream 85869 13360280 ~ 13361018 (+) True G331498
TU392593 lncRNA downstream 86958 13361369 ~ 13362702 (+) True G331496
TU392599 lncRNA downstream 106233 13380644 ~ 13382636 (+) True G331502
XR_004576995.1 lncRNA downstream 683613 13958024 ~ 13962184 (+) True LOC117595809
XM_026938128.2 mRNA upstream 231611 13021167 ~ 13042516 (+) True cul1b
XM_026938097.2 mRNA upstream 259018 12766560 ~ 13015109 (+) True LOC113541231
XM_034298168.1 mRNA upstream 561476 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 566124 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 775081 12428457 ~ 12499046 (+) True hs6st1b
XM_026937922.2 mRNA downstream 249 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 47926 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 61927 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 69335 13343746 ~ 13350216 (+) True c8g
XM_026938162.2 mRNA downstream 99153 13373564 ~ 13379652 (+) True klhl15
TU392569 other upstream 15711 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 561449 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1117340 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1525568 11738158 ~ 11748559 (+) True ankha
TU391206 other upstream 2299212 10973264 ~ 10974915 (+) True G330257
trnat-agu_17 other downstream 110790 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1977224 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2291764 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3833061 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3833061 17107472 ~ 17110027 (+) False hhatlb

Expression Profile