RNA id: TU392595



Basic Information


Item Value
RNA id TU392595
length 739
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G331498
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13360280 ~ 13361018 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CAAAAGATACACTTGCATCCAAATCCGGATGTAAAAAGACTTTACTGTAAATGGATTAAAGTGAGACTAACACATTATGACTCTTGTTGGCATATCCATCCATTATTTGTaacacattttttcactttataaaTAGTTTCATTTCAAAGTGTGACGACTGAATGAATTCAAGGGAGAAGTCTATAGTTAGGGTGCGTAAGCAAAACGGAAGACTACCCACACACAGGGCATATTTTGCTAGCTAGCCAAACTCTTAAATCAGTTAATGTTAAAACGTTAGCGTGAGCTAGCGCTAACAAACGGTGCCctgagggaaaataaataaatagtggtAAGTATTTAGATTCTTGAACTTCGACAGCTCATATCATATCGAGAATAAACAGGCAGTAACTAGGTTAGCGGGCTATCTTCACTGCTAGCTCGGTTTATAAATCACTATGTAAACCTGGCTAACTagtattatcatattatcacgTTATTTTCGCTTCACCGAGTTTAGAGTGTCATTAAGTACCAGTATACATTTTTCCCATCCTTAATCTATTAataccttttatttaaaaataataatgttattacgAAGTTAATGGCTAGCAAAGATTAGCTCGTTAGCTATTTCTGTATATTGATGCGTTAAGGTAAGCTAGGCTGCATCCCCAATGTTCATGTAGAGATGTAGACTAGATAGGATGCACAAGCCATTGTTTTAAGCCACACGTAGTGCACCTATAAAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU392561 lncRNA upstream 69881 13287447 ~ 13290399 (+) True G331468
TU392580 lncRNA upstream 85869 13274127 ~ 13274411 (+) True G331487
TU392579 lncRNA upstream 86239 13273743 ~ 13274041 (+) True G331486
TU392575 lncRNA upstream 90638 13269427 ~ 13269642 (+) True G331482
TU392573 lncRNA upstream 95694 13264349 ~ 13264586 (+) True G331480
TU392593 lncRNA downstream 351 13361369 ~ 13362702 (+) True G331496
TU392599 lncRNA downstream 19626 13380644 ~ 13382636 (+) True G331502
XR_004576995.1 lncRNA downstream 597006 13958024 ~ 13962184 (+) True LOC117595809
TU393268 lncRNA downstream 1327145 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 1583973 14944991 ~ 14945212 (+) True G332238
XM_026938165.2 mRNA upstream 10064 13343746 ~ 13350216 (+) True c8g
XM_026938148.2 mRNA upstream 18619 13336338 ~ 13341661 (+) True msrb2
XM_026938109.2 mRNA upstream 25755 13322337 ~ 13334525 (+) True armc3
XM_026937922.2 mRNA upstream 82255 13274660 ~ 13278025 (+) True skida1
XM_026938128.2 mRNA upstream 317764 13021167 ~ 13042516 (+) True cul1b
XM_026938162.2 mRNA downstream 12546 13373564 ~ 13379652 (+) True klhl15
XM_034298205.1 mRNA downstream 12796 13373814 ~ 13379652 (+) False klhl15
XM_026938163.2 mRNA downstream 12860 13373878 ~ 13379652 (+) False klhl15
XM_026937943.2 mRNA downstream 25056 13386074 ~ 13396461 (+) True cmbl
XM_026937944.2 mRNA downstream 25085 13386103 ~ 13396461 (+) False cmbl
TU392569 other upstream 101864 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 647602 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1203493 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1611721 11738158 ~ 11748559 (+) True ankha
TU391206 other upstream 2385365 10973264 ~ 10974915 (+) True G330257
trnat-agu_17 other downstream 24183 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1890617 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2205157 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3746454 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3746454 17107472 ~ 17110027 (+) False hhatlb

Expression Profile