RNA id: TU392599


Basic Information

Item Value
RNA id TU392599
length 1993
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G331502
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13380644 ~ 13382636 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tattgttttgtacatttgaTTAATAATCACAGAGAGGTCACTTTGGATGAATTTCTCAGGTTAGAATGTGTAGCTGGACAAATTGAGCTGACAGTGCATTGATAACACTcagtattattatcattttcgAGGTGCTGCACAAGGCAGTGTAGCACACTGAGAGGAAAACGCTATCAGCTTTCTTCTGCAAACATGATTTCACAGATGCCGGTGATTGGTTAGTTTTGCTCACTTAGCTCCTGGCCACAAATGGCCGTGGCTATTGTCAGGATTCGAATGTGCGAATAGTGCAAGGCCATAGATGAGAATGTGCAAGGTCAAGCAGATGTGACTTCTGAGAATGTCTCAAGgtaatattcataaatgtttaccATCTTTACTGTCaacattagctagctggctaatatactatatggccaaaaggttgCTAATACCTGACcactcacacccatatgtcctttttgaacatcccattccagatctAGTCCCCTcagtctgcctgcctgtctgtctgtccatctatctatctatccacaagagcatttgtaagggtcaggcactgatgttgggtgaggagacCACTCAAAACTTGGTAAACCATTTcttggacctcactttgtgcatagGGCCATTGACATGCCAGAACATATTTGGGCCTCTTTGTTTCAGcaaagggaaactgtaatgatacagcatacaaagacatcctatacaattgtgtactttCAACCTTGTTGCAACAGGTTGGGAAAggcccacatataggtgtgatgggcatgtgtgcacaaacttgtggccatatagtgtaggacCTAACCTGACAGGACTTCTGGGAGAATTTTTATGTCATGTTGGTAAATGTTTAGAATTAATATTATCTCTAGCTGGCTCACATAATCTAAAACCTATTTGAGTATAATCCTAAAACTACCTTTGAGCACCATGTGCCCACTCAAATACATTGGCAAGGTGTCTTTGAGGGCTCAAAAGATACACACGTGTCTACAAACAGGTTCTTCACATACAGAGCTTTAGTATGTGCAAAGAATTTACAAACAGGTTGTCCACATACAGAGTTTTAGTCACTGAGGCACAGTTATTAATTATGAATGTTTAATTACTGTTTGACAAAATACATGAAAGAAGTCAAATTGTACCTATAGGAAGCTGCCAGATTAAACGGCTTAATGATATTTAGCCTTAAAAGCCTGAACACATCAGAAGAAAGGCAGATCAGTGTACCATCTATCATTATCTATATAAGGTATATTGGCTATTCCACAGTCTTACTTAacgcattgttttttttttgtccagctACACATTATTCATGAGATTGTTCTACCCAGTCAGTTGACTTTCATGTAGTAACACTCAATTCTCATCTTCTCTATTACGCTTTCCATTAGGCATGCGCggttatacaatacaatacattatGATTTTCGACACCTCAAAGGTAGAGCCTGTCTAGATAGGTAGCACCTTGGGCAGCGCTTGTGCTCCTAAGCTAAGCTCTGTCCAATTCAGAAGGCAGCTTTTTCTAAGGCTTCATATTTGCATTTCTTCTTGAAGAAGGCAATCCCATAATAGTAATGTTAATGTATAGTTCTATACGTTATAGACTTTTATAAacctaaattatttattttaatatcagtACATGCCTACCTCGTATCTTTTCCCCCTTGGATTCATTGGCTTTGTACTGATATTATGTATGGTACTGGTTTGAACTTCCTCAAATACTGACTCCCTCATGTCTCTGTCTTGTgggtcatgttttctttttccacaaCCAGCTGTCAGTGTCATGTACATATAGACACCAAACTAAAGCCTGAAAGGGTTTCTGCTGTGCAGCTTAAGGTAAAAAATGCACAGGTCTATCCAATTTAGATTTATCCTTGTCACATATATCCTTCTGCAAAATAATCTGAATAAACAAATccagtttaataaaacataGCCCTGTATCTAAACTGTACTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392593 lncRNA upstream 17942 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 19626 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 90245 13287447 ~ 13290399 (+) True G331468
TU392580 lncRNA upstream 106233 13274127 ~ 13274411 (+) True G331487
TU392579 lncRNA upstream 106603 13273743 ~ 13274041 (+) True G331486
XR_004576995.1 lncRNA downstream 575388 13958024 ~ 13962184 (+) True LOC117595809
TU393268 lncRNA downstream 1305527 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 1562355 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 1573224 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 1683339 15065975 ~ 15113514 (+) True G332334
XM_026938162.2 mRNA upstream 992 13373564 ~ 13379652 (+) True klhl15
XM_034298205.1 mRNA upstream 992 13373814 ~ 13379652 (+) False klhl15
XM_026938163.2 mRNA upstream 992 13373878 ~ 13379652 (+) False klhl15
XM_026938165.2 mRNA upstream 30428 13343746 ~ 13350216 (+) True c8g
XM_026938148.2 mRNA upstream 38983 13336338 ~ 13341661 (+) True msrb2
XM_026937943.2 mRNA downstream 3438 13386074 ~ 13396461 (+) True cmbl
XM_026937944.2 mRNA downstream 3467 13386103 ~ 13396461 (+) False cmbl
XM_026937939.2 mRNA downstream 23528 13406164 ~ 13447748 (+) True mtrr
XM_034298306.1 mRNA downstream 592604 13975240 ~ 13980189 (+) True cbln2b
XM_034298235.1 mRNA downstream 851408 14234044 ~ 14295771 (+) True rttn
TU392569 other upstream 122228 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 667966 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1223857 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1632085 11738158 ~ 11748559 (+) True ankha
TU391206 other upstream 2405729 10973264 ~ 10974915 (+) True G330257
trnat-agu_17 other downstream 2565 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1868999 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2183539 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3724836 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3724836 17107472 ~ 17110027 (+) False hhatlb

Expression Profile