RNA id: TU392655


Basic Information

Item Value
RNA id TU392655
length 1251
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G331546
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13278136 ~ 13279386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaatgaagtgcTCAACACAATGTACGcccaaatacattttaatgaatatttcatcattcagaaaagaaaggaaagtgCTTCGAAATCCacatttcaagttttttttcgATTTGAGTGCATGTATCCTACACAACAAAGATATAcgaaaaaacaggaaaatcacaaaaataaatatgcgTTTTATAAACAACCAGTGACttcaaagttttaaaaaatgtccttgtCAAAACCTGACCTCAAGTATTGTACGAAAagtacagagacagaaagatgatCTCGACAATATGTCCATGTCTAGGCTTTTATGTGGTTTAAGCTACATGGAGTCACGCGCTCTTTTTGCATTATCAAACCTAAAACATTACGAGTTATCAGTAATGCATTACATTCTGCTTTGAATTTGGTGAAACTGAAATTCACAGTGCACTTTGACACGGACTTTTATTCTTTGCCAAAGGCCTACTAAACAACCGTACAGGCTGAATCAGAGTAATCAAAAatagtttcttaaaaaaaaaaaaaaaaaaaagcgtctTATCGCATTTGCAATTCCATGAATAGGCCTTCATTAGCCTAACAAACCTACTGAAATGCAGCACCCAATGACCTattacagagctgtgtgtgtgtgtgtgtgtgtgtgtgtggtcagcaCATTGTCGACTTGTTATACCTATACACTTAATGGCactgtatatttctgttttgttaagAAACTCAGAATGCATGATTCAAATCAGATGGCCATCCGCATTTTGGCTGCTTGCACTCCTTTGTGTGTCCAAAGCCTGCTTAGTGAGCAAACTGTGCTTTGCTCAAGGTAAACAAACACGTATGCTAAAATACTTCACAGTACATTCACAAGCATTTCTACGGGGCAGAAGAGCACCAAGTTGACACTTGAGTTTTGCACTTGAGAATTTCTTTGACATCAGAAGGTTTAGCTTCTCTAGTGGCTCAAGGCAGTTCATCTGAATTCTTGCATCGTGGAcaataattagaaataattatGTTGGCTAGTTGCAATAACttccttcttattttttttcacattgttatgTTTGCAGGAACACCACACTGTGTTTaaagctgtgtttgttaaaaaccgaatttaccacaaaaaaaaggttaaaattcATTTTAGCTAAACCAAGCAAAAACAGCACCCTAGGCCAACTGGgcctaattaaattaattacttgGCCTAATTAAAATGTCACAAATAAGTTATGGTGCAACCTCGTCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392648 lncRNA downstream 9250 13268550 ~ 13268886 (-) True G331539
XR_004576947.1 lncRNA downstream 9968 13264506 ~ 13268168 (-) True LOC117595775
TU392645 lncRNA downstream 15566 13262337 ~ 13262570 (-) True G331536
TU392644 lncRNA downstream 16893 13260676 ~ 13261243 (-) True G331535
TU392643 lncRNA downstream 26574 13251013 ~ 13251562 (-) True G331534
TU392669 lncRNA upstream 64228 13343614 ~ 13347857 (-) True G331560
TU392674 lncRNA upstream 101223 13380609 ~ 13382435 (-) True G331565
TU392678 lncRNA upstream 127000 13406386 ~ 13407458 (-) True G331568
TU392679 lncRNA upstream 133516 13412902 ~ 13413811 (-) True G331569
TU392965 lncRNA upstream 479543 13758929 ~ 13759290 (-) False LOC113541105
XM_026937945.2 mRNA downstream 19991 13187909 ~ 13258145 (-) True mllt10
XM_026938227.2 mRNA downstream 125213 13139657 ~ 13152923 (-) True LOC113541320
XM_034297840.1 mRNA downstream 149100 13080105 ~ 13129036 (-) True LOC113541106
XM_026938089.2 mRNA downstream 200810 13067250 ~ 13077326 (-) True pdia4
XM_026938282.2 mRNA downstream 216435 13044323 ~ 13061701 (-) True ezh2
XM_026938206.2 mRNA upstream 7944 13287330 ~ 13319439 (-) True pip4k2aa
XM_026938161.2 mRNA upstream 71955 13351341 ~ 13360097 (-) True zfx
XM_034298206.1 mRNA upstream 81983 13361369 ~ 13372043 (-) True eif2s3
XM_026938164.2 mRNA upstream 81983 13361369 ~ 13372011 (-) False eif2s3
XM_026937940.2 mRNA upstream 117882 13397268 ~ 13406077 (-) True cct5
TU392350 other downstream 600203 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 600203 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 2194985 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 2347361 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 2754873 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 1657500 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 1686427 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 3551310 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 3551310 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 3836712 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU241461 True 2219 lncRNA 0.42 1 NC_056722.1 16313505 ~ 16315723 (+)