Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU392965 |
| length | 224 |
| lncRNA type | sense_over |
| GC content | 0.51 |
| exon number | 2 |
| gene id | LOC113541105 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 13757658 ~ 13762615 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU392679 | lncRNA | downstream | 345118 | 13412902 ~ 13413811 (-) | True | G331569 |
| TU392678 | lncRNA | downstream | 351471 | 13406386 ~ 13407458 (-) | True | G331568 |
| TU392674 | lncRNA | downstream | 376494 | 13380609 ~ 13382435 (-) | True | G331565 |
| TU392669 | lncRNA | downstream | 411072 | 13343614 ~ 13347857 (-) | True | G331560 |
| TU392655 | lncRNA | downstream | 479543 | 13278136 ~ 13279386 (-) | True | G331546 |
| TU393198 | lncRNA | upstream | 707104 | 14466394 ~ 14466613 (-) | True | G332056 |
| TU393340 | lncRNA | upstream | 754445 | 14513735 ~ 14522615 (-) | True | G332169 |
| TU393341 | lncRNA | upstream | 758349 | 14517639 ~ 14521648 (-) | False | G332169 |
| TU393312 | lncRNA | upstream | 777962 | 14537252 ~ 14564704 (-) | True | G332147 |
| TU393330 | lncRNA | upstream | 784742 | 14544032 ~ 14634926 (-) | True | G332164 |
| XM_026937955.2 | mRNA | downstream | 4572 | 13749291 ~ 13754357 (-) | True | timm21 |
| XM_034297986.1 | mRNA | downstream | 9296 | 13738992 ~ 13749633 (-) | False | si:dkey-118j18.2 |
| XM_034297985.1 | mRNA | downstream | 10857 | 13737766 ~ 13748072 (-) | False | si:dkey-118j18.2 |
| XM_034297984.1 | mRNA | downstream | 10859 | 13737766 ~ 13748070 (-) | True | si:dkey-118j18.2 |
| XM_026938143.2 | mRNA | downstream | 40814 | 13509875 ~ 13718115 (-) | True | sema5a |
| XM_026937887.2 | mRNA | upstream | 6569 | 13765859 ~ 13867147 (-) | True | neto1l |
| XM_026938268.2 | mRNA | upstream | 195267 | 13954557 ~ 13968348 (-) | True | fbxo15 |
| XM_026938270.2 | mRNA | upstream | 195267 | 13954557 ~ 13963943 (-) | False | fbxo15 |
| XM_026938271.2 | mRNA | upstream | 196110 | 13955400 ~ 13968352 (-) | False | fbxo15 |
| XM_026938180.2 | mRNA | upstream | 457848 | 14217138 ~ 14223311 (-) | True | LOC113541290 |
| TU392350 | other | downstream | 1080996 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| TU392351 | other | downstream | 1080996 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| TU391338 | other | downstream | 2675778 | 11082268 ~ 11083151 (-) | True | G330379 |
| XR_003404157.2 | other | downstream | 2828154 | 10923126 ~ 10930775 (-) | False | ackr4b |
| TU391129 | other | downstream | 3235666 | 10522732 ~ 10523263 (-) | True | G330185 |
| XR_003404167.2 | other | upstream | 1177596 | 14936886 ~ 14937404 (-) | False | LOC113541102 |
| TU393587 | other | upstream | 1206523 | 14965813 ~ 15065810 (-) | False | LOC113541115 |
| XR_004576965.1 | other | upstream | 3071406 | 16830696 ~ 16879884 (-) | False | oxsr1b |
| XR_004576964.1 | other | upstream | 3071406 | 16830696 ~ 16879883 (-) | False | oxsr1b |
| XR_003404146.2 | other | upstream | 3356808 | 17116098 ~ 17139685 (-) | False | zbtb47b |
