RNA id: TU393198


Basic Information

Item Value
RNA id TU393198
length 200
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G332056
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14466394 ~ 14466613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgacttgtggccaagtatggtgacccatacttggaatttgtgctctgcatttaacccatccaagtgcacacacacacagtagtgaacacaaacacacaccgtgaacacacacccggagcagtgggcagccttttttgctgtggcgcccggggagcagttgggggttcggtgccttgctcaagggtctcacctcagtcgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392965 lncRNA downstream 707104 13758929 ~ 13759290 (-) False LOC113541105
TU392679 lncRNA downstream 1052583 13412902 ~ 13413811 (-) True G331569
TU392678 lncRNA downstream 1058936 13406386 ~ 13407458 (-) True G331568
TU392674 lncRNA downstream 1083959 13380609 ~ 13382435 (-) True G331565
TU392669 lncRNA downstream 1118537 13343614 ~ 13347857 (-) True G331560
TU393340 lncRNA upstream 47122 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA upstream 51026 14517639 ~ 14521648 (-) False G332169
TU393312 lncRNA upstream 70639 14537252 ~ 14564704 (-) True G332147
TU393330 lncRNA upstream 77419 14544032 ~ 14634926 (-) True G332164
TU393373 lncRNA upstream 247604 14714217 ~ 14797198 (-) True G332196
XM_026938127.2 mRNA downstream 37024 14419894 ~ 14429370 (-) False pi15a
XM_026938126.2 mRNA downstream 37024 14419894 ~ 14429370 (-) False pi15a
XM_026938125.2 mRNA downstream 37024 14419894 ~ 14429370 (-) True pi15a
XM_026938151.2 mRNA downstream 92941 14313082 ~ 14373453 (-) False dok6
XM_026938150.2 mRNA downstream 92941 14313082 ~ 14373453 (-) True dok6
XM_026937825.2 mRNA upstream 9324 14475937 ~ 14482845 (-) True gdap1
XM_026937932.2 mRNA upstream 69949 14536562 ~ 14540764 (-) True thtpa
XM_026937902.2 mRNA upstream 112172 14578785 ~ 14586869 (-) True ngdn
XM_026938179.2 mRNA upstream 151430 14618043 ~ 14629435 (-) True prdm14
XM_026937935.2 mRNA upstream 169073 14635686 ~ 14695608 (-) False ncoa2
TU392350 other downstream 1788461 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1788461 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 3383243 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 3535619 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 3943131 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 470273 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 499200 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 2364083 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 2364083 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 2649485 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile