RNA id: TU393426


Basic Information

Item Value
RNA id TU393426
length 222
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G332238
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14944991 ~ 14945212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtggtattccaggtggttgctagggtctTCTTATGGTATGTCTGGGggtttgctagggtgttgctaggcagTTGCTATGGCATCCCTTATGGTTGCTAGGGTGGTGCTAAGCAGTTACTATGGTGTTCCAGGTGGTTTCTACGGTTTTGCTTCTGTGctgctatggtattccaggtggttgatAGGGTTATGATAGGTGGTTGCTGTGATGTTGCCAGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393268 lncRNA upstream 241721 14688163 ~ 14703270 (+) True G332111
XR_004576995.1 lncRNA upstream 982807 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1562355 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1582289 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1583973 13360280 ~ 13361018 (+) True G331498
TU393440 lncRNA downstream 10648 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 120763 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 166451 15111663 ~ 15112523 (+) False G332334
TU393555 lncRNA downstream 256605 15201817 ~ 15202305 (+) True G332348
TU393552 lncRNA downstream 278308 15223520 ~ 15314968 (+) False stau2
XM_034298216.1 mRNA upstream 96907 14796644 ~ 14848084 (+) False eya1
XM_026938196.2 mRNA upstream 96907 14803020 ~ 14848084 (+) False eya1
XM_026938195.2 mRNA upstream 96908 14796644 ~ 14848083 (+) True eya1
XM_026938197.2 mRNA upstream 96908 14796644 ~ 14848083 (+) False eya1
XM_034298215.1 mRNA upstream 96908 14796644 ~ 14848083 (+) False eya1
XM_026938122.2 mRNA downstream 139309 15084521 ~ 15110314 (+) True trpa1b
XM_034297859.1 mRNA downstream 176014 15121226 ~ 15129603 (+) False flj11011l
XM_026937852.2 mRNA downstream 177265 15122477 ~ 15129603 (+) False flj11011l
XM_034297860.1 mRNA downstream 179522 15124734 ~ 15129603 (+) True flj11011l
XM_034298109.1 mRNA downstream 189141 15134353 ~ 15224591 (+) False stau2
trnat-agu_17 other upstream 1559717 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1686575 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2232313 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2788204 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 3196432 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 306423 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 620963 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2162260 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2162260 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2339870 17285082 ~ 17300011 (+) True G333388

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU130947 False 1442 TUCP 0.34 1 NC_056710.1 15310563 ~ 15312004 (+)
mexican tetra (Astyanax mexicanus) TU130947 False 900 lncRNA 0.47 3 NC_035907.1 4505485 ~ 4507415 (-)