RNA id: TU393529


Basic Information

Item Value
RNA id TU393529
length 841
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G332334
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15065975 ~ 15113514 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATAGACACAACATGAGTGCCGAAAAGTTCAGACTCAAGATTGAAAAAGGATTTTAATTAACTTCGTTAATAATTTACAAACGCACTCTGGAGAGCTGCAGGAACAAATTTCAGTGACATATATATAGACACGcattcccaaacacacacacacacacacacacacacacacacacacacatttctactcTTCACTCTTTTACATTACACTCCAAAATAACATTTCCCTTTTTAAATCACCATTAACACTATTACAATCTTTTATATTAttcagctttaacacagctgtCAGTTTTAAcatcatttgatttttttttttaaaagctgtgtTCTCTTACATGGAGACAAAAAGcaatatcattatcatcattattatttttatcactaTTATTACTGTGTGATGTAAATTATGTTGCTGTGTCTAACTTTACCATCAGAGcatgtttaaacagtatctgaaAACTCTGAGCTTCAGAATAAGGAACAAAGATCTATAGTGCGCTTAAAAAACATTACTGAGCTTGTGTGTCGCCCTggtttttttgtgcagttttattctttttggcCAGCAGAAAAACATAACCTATATAATttcagaatcacacacacaactctagGCCAGTTCACTTCTACTCTGTCTTCTTTTCTGGCCtccactcactcattctctctctttgtccagcaggtgagtgtgtctgtgctcCCACAAGCGAATTGCACCATCCCACTGCAGGAAAATAAGGAAGAGATGCTAGTGTTCTTACTACAACACTGAGTATTTTTACAGCTGTTTCAAATGTtaccaaactttgaacatcatGCAGAGCACCATGaaattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393440 lncRNA upstream 155596 14955860 ~ 14956067 (+) True G332248
TU393426 lncRNA upstream 166451 14944991 ~ 14945212 (+) True G332238
TU393268 lncRNA upstream 408393 14688163 ~ 14703270 (+) True G332111
XR_004576995.1 lncRNA upstream 1149479 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1729027 13380644 ~ 13382636 (+) True G331502
TU393555 lncRNA downstream 89294 15201817 ~ 15202305 (+) True G332348
TU393552 lncRNA downstream 110997 15223520 ~ 15314968 (+) False stau2
TU393773 lncRNA downstream 216091 15328614 ~ 15332432 (+) True G332527
XR_003404151.2 lncRNA downstream 301349 15413872 ~ 15418923 (+) True LOC113541145
XR_004576951.1 lncRNA downstream 458340 15570863 ~ 15579798 (+) True LOC113541248
XM_026938122.2 mRNA upstream 1349 15084521 ~ 15110314 (+) True trpa1b
XM_026938196.2 mRNA upstream 263579 14803020 ~ 14848084 (+) False eya1
XM_034298215.1 mRNA upstream 263580 14796644 ~ 14848083 (+) False eya1
XM_034297859.1 mRNA downstream 8703 15121226 ~ 15129603 (+) False flj11011l
XM_026937852.2 mRNA downstream 9954 15122477 ~ 15129603 (+) False flj11011l
XM_034297860.1 mRNA downstream 12211 15124734 ~ 15129603 (+) True flj11011l
XM_034298109.1 mRNA downstream 21830 15134353 ~ 15224591 (+) False stau2
XM_026938099.2 mRNA downstream 22501 15135024 ~ 15224591 (+) False stau2
trnat-agu_17 other upstream 1726389 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1853247 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2398985 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2954876 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 3363104 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 139112 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 453652 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 1994949 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1994949 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2172559 17285082 ~ 17300011 (+) True G333388

Expression Profile