Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU393552 |
| length | 1097 |
| lncRNA type | read_through |
| GC content | 0.42 |
| exon number | 2 |
| gene id | stau2 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 15134353 ~ 15314968 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU393555 | lncRNA | upstream | 21215 | 15201817 ~ 15202305 (+) | True | G332348 |
| TU393531 | lncRNA | upstream | 110006 | 15065975 ~ 15113514 (+) | True | G332334 |
| TU393529 | lncRNA | upstream | 110997 | 15111663 ~ 15112523 (+) | False | G332334 |
| TU393440 | lncRNA | upstream | 267453 | 14955860 ~ 14956067 (+) | True | G332248 |
| TU393426 | lncRNA | upstream | 278308 | 14944991 ~ 14945212 (+) | True | G332238 |
| TU393773 | lncRNA | downstream | 13646 | 15328614 ~ 15332432 (+) | True | G332527 |
| XR_003404151.2 | lncRNA | downstream | 98904 | 15413872 ~ 15418923 (+) | True | LOC113541145 |
| XR_004576951.1 | lncRNA | downstream | 255895 | 15570863 ~ 15579798 (+) | True | LOC113541248 |
| XR_003404160.2 | lncRNA | downstream | 255895 | 15570863 ~ 15571817 (+) | False | LOC113541248 |
| TU393930 | lncRNA | downstream | 277120 | 15592088 ~ 15617234 (+) | True | G332650 |
| XM_034297859.1 | mRNA | upstream | 93917 | 15121226 ~ 15129603 (+) | False | flj11011l |
| XM_026937852.2 | mRNA | upstream | 93917 | 15122477 ~ 15129603 (+) | False | flj11011l |
| XM_034297860.1 | mRNA | upstream | 93917 | 15124734 ~ 15129603 (+) | True | flj11011l |
| XM_026938122.2 | mRNA | upstream | 113206 | 15084521 ~ 15110314 (+) | True | trpa1b |
| XM_026938196.2 | mRNA | upstream | 375436 | 14803020 ~ 14848084 (+) | False | eya1 |
| XM_026937952.2 | mRNA | downstream | 68018 | 15382986 ~ 15397527 (+) | True | si:ch73-173p19.1 |
| XM_034297849.1 | mRNA | downstream | 272334 | 15587302 ~ 15614891 (+) | False | tpk1 |
| XM_026937807.2 | mRNA | downstream | 272703 | 15587671 ~ 15614891 (+) | False | tpk1 |
| XM_026937805.2 | mRNA | downstream | 272837 | 15587805 ~ 15614891 (+) | True | tpk1 |
| XM_026937806.2 | mRNA | downstream | 272854 | 15587822 ~ 15614891 (+) | False | tpk1 |
| trnat-agu_17 | other | upstream | 1838246 | 13385201 ~ 13385274 (+) | True | trnat-agu_17 |
| TU392569 | other | upstream | 1965104 | 13257894 ~ 13258416 (+) | True | G331476 |
| TU392341 | other | upstream | 2510842 | 12706939 ~ 12712678 (+) | True | G331263 |
| XR_003404147.2 | other | upstream | 3066733 | 12062332 ~ 12156787 (+) | True | prkag2a |
| TU391847 | other | upstream | 3474961 | 11738158 ~ 11748559 (+) | True | ankha |
| TU393912 | other | downstream | 251207 | 15566175 ~ 15566663 (+) | True | G332636 |
| TU394735 | other | downstream | 1792504 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394736 | other | downstream | 1792504 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394798 | other | downstream | 1970114 | 17285082 ~ 17300011 (+) | True | G333388 |
| TU394792 | other | downstream | 1972192 | 17287160 ~ 17302004 (+) | False | G333388 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| rainbow trout (Oncorhynchus mykiss) | TU297359 | True | 326 | lncRNA | 0.44 | 1 | NC_048567.1 | 43981255 ~ 43981580 (+) |
| eurasian perch (Perca fluviatilis) | TU297359 | True | 2018 | lncRNA | 0.41 | 2 | NC_053133.1 | 14678080 ~ 14680120 (-) |
| mexican tetra (Astyanax mexicanus) | TU297359 | True | 1328 | lncRNA | 0.38 | 1 | NC_035921.1 | 25192908 ~ 25194235 (+) |
| mexican tetra (Astyanax mexicanus) | TU30192 | True | 1676 | lncRNA | 0.37 | 2 | NC_035899.1 | 29325203 ~ 29329498 (-) |
