RNA id: XM_034298108.1


Basic Information

Item Value
RNA id XM_034298108.1
length 3664
RNA type mRNA
GC content 0.48
exon number 15
gene id stau2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15134353 ~ 15314968 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATGACAACTGCCTCACTTTACTCTACAACTGATATCATCATAATGTCTCCCTGCATTGTGGGATTGTGTCAGAGAGAGCTTTTTGCTAACTTTCCGGGGAagagataaaaataattttatttaatatttaataataatgattttgaTCCGTACAAAACTTCGAGACAGTGAGCGATTAATGACTCTGATGGACTACCtcgataattttttttatttgaagtttATAAGCTCCAAAGCTCAATGTGCAGTTCCCAAGTGGACGGGTAACGTTACAGGACTATGATATAGAGCATGGCTCAAGTGAAAGTGCAGACCTCAGCGCACGCCGTGCCCTCCATCAATGGCACTGTGCCCACCGTcccaccagcTCCTCCCCAGGATAACATGGCAAACCCTAAAGAGAAAACTCCGATGTGTCTGGTGAATGAGTTAGCCCGTTTCAACCGGATCCAGCCGCAGTACAAACTGCTGAACGAGCGGGGGCCTGCACACGCCAAGATCTTCACTGTACAGTTGTGTTTAGGGGAGCAGGTGTGGGAATCTGAAGGCTCCAGCATTAAGAAAGCTCAACACTCAACAGCCAATAAAGCGCTGGCAGAGAGCTCGCTGCCCCGCCCCCCGCCACGCATCACtaaaccagacacacacaccaatccaGgCAGCATCACCCCCACTGTGGAGCTGAATGGATTGGCGATGAAGCGAGGAGAACCGGCTGTCTACAGGCCGCTGGAACCCAAACCCCTCTACAACTACAGGGCCAACTACAACTTCAGAGGAATATTCAATCAGAGGTATCACTATCCAGTCCCCAAGGTGTTCTACGTGCAGCTGACGGTAGGCAGTAACGAGTTTATTGGCGAAGGTCGAACTCGCCAAGCAGCTCGGCACAACGCAGCCATGAAAGCTTTGCAGGCGCTGAGGAATGAACCCATTCCTGAAAAGCAACctcagAGTCCAGAGGAGAAAAAAGGCTCGGAGGAGGACAGCGACgcaaataaatctgaaatcagTCTGGTGTATGAGATTGCACTGAAGAGGAACATGCCTGTGAATTTtgagGTGCTGAAGGAGAGCGGCCCACCCCACATGAAGAGCTTCCTGACCCGCGTGACGGTGGGCGAGTTCTCCGCCGAGGGTGAGGGCAACAGCAAGAAGCTGTCGAAGAAGCGTGCAGCTTTCTCCATCCTGCAGGAGCTGAAGAAGCTTCCCTTCATCCCTGTAGTGGAGAAGCCCAAAGTGCACTATAAGAAACGGCCCAAGACCATACTCAAGGCGGGGCCGGAGTACGGTCAGGGCATGAACCCCATCAGCCGACTCGCACAGATCCAGCAGGCTAAACGAGAGAAAGAGCCCGAGTACACACTGCTGTCTGAGAGAGGCCTGCCACGCCGCCGAGAGTTCATCATGCAGGTGAAGGTGGGTGATGAAGTGACCTCAGGAACAGGGTCAAATAAAAAAGTCGCTAAACGTGCAGCTGCAGAGGCGATGCTGCTCCATCTGGGATACAAAGCCTCCACGCCTATTCAGAACACACAGGAGAagCCACACATGGACAACAAAAGCTGGAATGGACAAAGAGCCACTTTCCCCGAAGCCAGCACTAACACGCAGAAAGGAATCCTCCACCTCTCTCCGGATGTGTACCAGGAGATGGAGGCCAGCAGGAATAAAGGTGGCACTACCCCCTCCGTCACCCCTATGACCCCCGTGACCTCTGTGACCTATATGAACCCGAAAGAAGTGAGCCAGGCACCGTTTTACAACAACAGCGCCTCAAAGACAGCCGCCATCGCACGGGAGCTGCTGAGCAAAACGCCAAAAACACCCACGATCCCTTGCAGCTCCGTTCAGCCATCGCAGCAGCTCGAGTACCTCGCTCACATTCAGGGCTTCCAGGTGCAGTATacggacagacagacggacacaGAGTTTGTGACgtatctcactctctcacccGTTCAGATGACGTTCCACGGCATTGGGAGCTCCATACAGGCCAGCCATGACCAGGCGGCTCTGAGTGCCTTGAAGCAGCTTTCGGAGCAGGGACTCGACCCGGTGGACGGAGGAGTCAAGGTAGAGAATGGATCCTGTGAAATATCGGTGAAGCATCCGGATGGGAAACAGACTAACTCAGGCTCTCAGGACTGCGCAGATCCGAACGCTGTCGTGTAGAAAACGAGTCTTCGCGAACGCCGCCGGATTCCTCGGAACATCGACACGCAATAGGGTGGATGTGTCTCAACAACATGACGTagaacaacacacactcgctctcaGTCTATGTGAAGACAACACTATCTTAACCTTTAGTTACTATGGAAAATTTAACTTgctaacaaatgtaaaaaaaaaaaaaccaaaccaaaaaaaaagaagaagaagaactaaCGTGATAATGAGTTAATGCATGGTACTGTGTTGACTTTATGGGAAATCTAAGTATTACAAATTTCCCTGATtgatagatgtttttttttttttaattttattttagtctCTTATGGATTAAGCAGGTGTGTATCATGCCATGGAATTAAAACGAAACATTATAAACAAAGTTCTGTAAAGGGtgtggggggaggggggttTACGTACgttattttttcttaatagcAATGCTTGAGTGCGTGAAGATTAACAGACGATGGCAGTGCTGTAAAAGTTGTAGTTGTTGTCTTCATATATAATCACCCAGCTTAGCGTTTATGCTGATGTTCATGTATCTGTACGGATGTGTACAAGTATCACacgaaggagaagaaaaaaaacgaaaaatCTAACGACAGAGACAGAATTAGCTGAGAGGTCGATGAGGATGTGGTCtgtattattgtaaataaagcAAGTCCACTAGATTCACATCAACTCAGTGTTTTATGAGCAACGCGATTTCACACAGCATTCCTTACCTCCGTGTTCGCTTTCTAAACCCCGCCTGTGCATCCTAACATCAACTCATTTTACTTACTTCATTTCAGCTCCGCCCACTCACGTTAACCCCTTTTCCTTTCAACCTCATCTACTGCATTAACCACGCCCCCATCCAACCTCACGTCCATCTTAAATTTCATTTCTTACCTTAACTATGCTTTATGCTTTAACATGATCCCTTGCTTTACCTCCAGCCCTAATGCTAACCTTGTTTCGTCTCTTGCTTTAACCCCGCCCCTCACTCACTCCTACGTAGCCTTCACCTAAATATTCACTCTAACGCTGTCTTCTTCTTCTCGCTCAAGCCTTGATTCTTCAGACAGACCCCACCTCCTCTTTTACTATGTAACTAGCCCCACCCTGCCCCTGCTCCATACCCTAACCCCACCCACACCAGTCATTACCAGTTGTAAGTGTTCCTACGCAACATCTTTTGTGGATTTGCGAGTTGAACGAGATGTGTAACAGTCACGTGCTaattctgtttctgtgttttctccCAGCACATCTACACCCTAAACGCTGTGTGTTGTATCGATAATGCATCAACTGAGTGCTTTTAATAACTGCATTCTGGAGGAGTTTAGCGAAGAGAGCCTGCATAGCTTCTCCTTCCAAACAGCTCGATTACTTGAATCTTTCATTTTCACAACAgcatttttctgtgtttaaattttagttaaagaaatgcagtaaaatCACATCAGTTTGTGTTGaaaaggtg

Function

GO:

id name namespace
GO:0007281 germ cell development biological_process
GO:0006810 transport biological_process
GO:0008354 germ cell migration biological_process
GO:0005874 microtubule cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K17597 STAU; double-stranded RNA-binding protein Staufen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393531 lncRNA upstream 24217 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA upstream 25208 15111663 ~ 15112523 (+) False G332334
TU393440 lncRNA upstream 181664 14955860 ~ 14956067 (+) True G332248
TU393426 lncRNA upstream 192519 14944991 ~ 14945212 (+) True G332238
TU393268 lncRNA upstream 434461 14688163 ~ 14703270 (+) True G332111
TU393773 lncRNA downstream 104023 15328614 ~ 15332432 (+) True G332527
XR_003404151.2 lncRNA downstream 189281 15413872 ~ 15418923 (+) True LOC113541145
XR_004576951.1 lncRNA downstream 346272 15570863 ~ 15579798 (+) True LOC113541248
XR_003404160.2 lncRNA downstream 346272 15570863 ~ 15571817 (+) False LOC113541248
TU393930 lncRNA downstream 367497 15592088 ~ 15617234 (+) True G332650
XM_034297859.1 mRNA upstream 8128 15121226 ~ 15129603 (+) False flj11011l
XM_026937852.2 mRNA upstream 8128 15122477 ~ 15129603 (+) False flj11011l
XM_034297860.1 mRNA upstream 8128 15124734 ~ 15129603 (+) True flj11011l
XM_026938122.2 mRNA upstream 27417 15084521 ~ 15110314 (+) True trpa1b
XM_026938196.2 mRNA upstream 289647 14803020 ~ 14848084 (+) False eya1
XM_034298261.1 mRNA downstream 27045 15251636 ~ 15265895 (+) True si:ch73-173p19.2
XM_026937952.2 mRNA downstream 158395 15382986 ~ 15397527 (+) True si:ch73-173p19.1
XM_034297849.1 mRNA downstream 362711 15587302 ~ 15614891 (+) False tpk1
XM_026937807.2 mRNA downstream 363080 15587671 ~ 15614891 (+) False tpk1
XM_026937805.2 mRNA downstream 363214 15587805 ~ 15614891 (+) True tpk1
trnat-agu_17 other upstream 1752457 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1879315 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2425053 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2980944 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 3389172 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 27044 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 341584 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 1882881 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1882881 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2060491 17285082 ~ 17300011 (+) True G333388

Expression Profile