RNA id: TU393555


Basic Information

Item Value
RNA id TU393555
length 414
lncRNA type intronic
GC content 0.31
exon number 2
gene id G332348
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15201817 ~ 15202305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATAAACACACGAGTCATAGCCACACAAAAGTTGAATAGTAGACCAAACCATTGTACAAAATAATGGGGAAATGTTGACCTTCTGCAACATGGAGATAaattaaagaattatagaaATATTGACACTAAATGAAGTCTTACATTTTTTAGCAGTATATATTGTATCATAATATCAAAtacaactacaacaactactacaattactactactactacagctaCTAGTGCTACTTCTACTagtactacaactactactactactattattactactacaactactactacaaccactactacaattactactactactacagctaCTAGTGCTTCTTCTACTagtactacaactactacttctactattattactactactactacaactactacttctactattattactactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393531 lncRNA upstream 88303 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA upstream 89294 15111663 ~ 15112523 (+) False G332334
TU393440 lncRNA upstream 245750 14955860 ~ 14956067 (+) True G332248
TU393426 lncRNA upstream 256605 14944991 ~ 14945212 (+) True G332238
TU393268 lncRNA upstream 498547 14688163 ~ 14703270 (+) True G332111
TU393552 lncRNA downstream 21215 15223520 ~ 15314968 (+) False stau2
TU393773 lncRNA downstream 126309 15328614 ~ 15332432 (+) True G332527
XR_003404151.2 lncRNA downstream 211567 15413872 ~ 15418923 (+) True LOC113541145
XR_004576951.1 lncRNA downstream 368558 15570863 ~ 15579798 (+) True LOC113541248
XR_003404160.2 lncRNA downstream 368558 15570863 ~ 15571817 (+) False LOC113541248
XM_034297859.1 mRNA upstream 72214 15121226 ~ 15129603 (+) False flj11011l
XM_026937852.2 mRNA upstream 72214 15122477 ~ 15129603 (+) False flj11011l
XM_034297860.1 mRNA upstream 72214 15124734 ~ 15129603 (+) True flj11011l
XM_026938122.2 mRNA upstream 91503 15084521 ~ 15110314 (+) True trpa1b
XM_026938196.2 mRNA upstream 353733 14803020 ~ 14848084 (+) False eya1
XM_034298261.1 mRNA downstream 49331 15251636 ~ 15265895 (+) True si:ch73-173p19.2
XM_026937952.2 mRNA downstream 180681 15382986 ~ 15397527 (+) True si:ch73-173p19.1
XM_034297849.1 mRNA downstream 384997 15587302 ~ 15614891 (+) False tpk1
XM_026937807.2 mRNA downstream 385366 15587671 ~ 15614891 (+) False tpk1
XM_026937805.2 mRNA downstream 385500 15587805 ~ 15614891 (+) True tpk1
trnat-agu_17 other upstream 1816543 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1943401 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2489139 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 3045030 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 3453258 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 49330 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 363870 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 1905167 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1905167 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2082777 17285082 ~ 17300011 (+) True G333388

Expression Profile