RNA id: TU393930


Basic Information

Item Value
RNA id TU393930
length 2372
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G332650
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15592088 ~ 15617234 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttttttttttttttttttacatcatgtggacagccgagtgcgtgtcacttacctggggcaccaggatgcactatgggaagaaggcaagcaggcagaggcagtgtgatgctctgggcaatgttctgctgggaaaccttgggtcctggcattcatgtggatgttactttgacatgtaccacccacctaaacattgttgcagaccaagtatgCTCCTtaatggcaacggtattccttaatagcagtggcctctttcagcaggataatgcgccctgccacactgcaaaaattgtttaggaaaggtttgaggaacatgacaaagagttgaaggtgttgacttggcttccaaattccccagacctcaatccgatcgagcatctgtgggatgtgctggacagaCAAGTCTGGTCCATGGAGGCaccacaacttacaggacttaaacgATCTACTTAAAggaacatcttggtgccagataccacagcacaccttcagaagtcttgtagaatccatgcctcgatgggtcagagctgttttggtggcacaatattttaatgttatgtttaaatgttatggctgattgatgtATATGTGCCTTACGATAACCACAAACCTTGTTAATAAAAGACAATTCACTTTTTCCactgatttattaaaacaaacaaacaaacaaaaaaatatcacaaaacagATCATTCAATCTACAAATTCAGTCCCAGTCCATCATCCAATGCTGTTCCATGCTTCCAAAGAAGTTCAAAATGGAGTTGATTCAACCACCACTGAAAAAGAGGAAAGCAAAAATCAGGTTGACTGATCAGAGTCATGATGCACAACACTTCCACAAGACAGACATTGGAGCAAGAttataccacaaaaaaaaaaaaaatcaccacgCTGCCATGTTAACGCCTTTGCCTTTCTTTGCCTCAGTCAGCTGCAGCTGTGCCACATTTGCTGCTACACACACTAGGACCGGGCAATATGATCATATAATCAATATTATGATAAATTGTATCACAATATACTTTTCagcaatatcacaatatcatcaGTTTTTTTGTGTAACAGTTACTGAATTGAAGCAGCTAACTGATGGTTAACATTTTGTGCTAAAtcttcagtgttaaataatgaaGGATCATCTAATTGCACCGCTGTTTTGCTGGCAGCTTTTGAACAAACCTAttgtaacactttttttttttttttaaatgtagaaatgtcttGTATAAcgatatgatttttttcctacacATAACCCGAccctatgttcacactagcaagcaacaagtTGTTTGTAGTTGGTGTCATGTAGTTGGGCATGCAGCACCTACTATCTCTGTCACTTGTAGGTGTGTACTGTCCAACCTCTTTTGAAACCACagttaaaaaagtaaatgggaactaactgcaTGTAGGAacagtggggaactgaagaaaagtCAGACCACATGCAccataggattggtctgaggCATTACTCAGATTGCTCATTTGCATAgacttgagaaaaaaaatcgagAAAATTTAAGTGTCACTTGTTGCAGGAGActgcgagttcaaatcccaaagGGCTTAAACCTTATAAACGTTATGGCTAAATGGCAGACGTTGGCACCTTTGTTACCTGATCTGCGCACAAGTGGATCAGATAGCACCAGTCCTTCCAATTCAATCTgctgcacacatttttttaaatcgtaCACTATTTGGCCAGAAGTTTGCagacaactgaccatcacacccatatgtggttcttccccaaactttgttgccacaaaattgtaggcacacaactgtctaggatgtctttgtatgctgtagctttaccatttctcttcactggaagtaagaggcccaatcctgttccagcatgacaatgcccctgcacaaagcaagctccaggAAGatatggtgtgtgaaggttggagtggaagaacttgagtgttctgcacagaaccctgacctcagccctactgaacacctttgggctgaactggaacaccgactgcaccccagacctcctcacctaacaatcagtgcctgacctcactaatgctcttgtggctgaatgaacacaaatccccataaccacgctccaaaatctagtggaaagactttgCAGAAGAgtagattattataacagcaaaaagggaactaaatctggaatgggatgttcaacaatcacatatgggtgtgatggtcaggtgtccacaaacttacACCTTATATAGTGTaatccatatagtgtatcttctATCATTTTAACTTGAGCACTGGAACATTACCTGATTACCTGTTTTGATCAAAAGTATTTTCATGTGTATTGttgtgtacctaataaactgctgagtattttaatgca

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00500 Starch and sucrose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism
ko04922 Glucagon signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576951.1 lncRNA upstream 12290 15570863 ~ 15579798 (+) True LOC113541248
XR_003404160.2 lncRNA upstream 20271 15570863 ~ 15571817 (+) False LOC113541248
XR_003404151.2 lncRNA upstream 173165 15413872 ~ 15418923 (+) True LOC113541145
TU393773 lncRNA upstream 259656 15328614 ~ 15332432 (+) True G332527
TU393552 lncRNA upstream 277120 15223520 ~ 15314968 (+) False stau2
TU394071 lncRNA downstream 424150 16041384 ~ 16041587 (+) True G332788
TU394073 lncRNA downstream 484516 16101750 ~ 16102212 (+) True G332790
TU394074 lncRNA downstream 485037 16102271 ~ 16102597 (+) True G332791
TU394160 lncRNA downstream 602319 16219553 ~ 16220945 (+) True G332859
TU394510 lncRNA downstream 978547 16595781 ~ 16620089 (+) True G333157
XM_026937952.2 mRNA upstream 194561 15382986 ~ 15397527 (+) True si:ch73-173p19.1
XM_034298261.1 mRNA upstream 326193 15251636 ~ 15265895 (+) True si:ch73-173p19.2
XM_034298109.1 mRNA upstream 367497 15134353 ~ 15224591 (+) False stau2
XM_026937826.2 mRNA downstream 2914 15620148 ~ 15629965 (+) True panx1a
XM_026938236.2 mRNA downstream 459657 16076891 ~ 16096771 (+) True hephl1a
XM_026938234.2 mRNA downstream 583262 16200496 ~ 16219013 (+) False LOC113541322
XM_026938235.2 mRNA downstream 584750 16201984 ~ 16219013 (+) False LOC113541322
XM_026938231.2 mRNA downstream 584751 16201985 ~ 16219013 (+) False LOC113541322
TU393912 other upstream 25425 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 327501 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 2206814 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 2333672 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2879410 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 1490238 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1490238 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 1667848 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 1669926 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 1669926 17287160 ~ 17295054 (+) False G333388

Expression Profile