RNA id: XM_034297874.1


Basic Information

Item Value
RNA id XM_034297874.1
length 2455
RNA type mRNA
GC content 0.46
exon number 11
gene id cpa6
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16281271 ~ 16312916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCGCTTTAAAAGTCGAGATGAGCGCGCGATGTTCCCCACCTGAGCGATTTCACACCTCAGCAGCGCGAGCAGGAGCCAGACAGCGCCAGAGCAGGGAGcgtctcctctcctccctccacGAGGATGTGGAGAATGTGAAGAACCTGCAGCAACGCGCTTTCCTTTTTCCCTCTTTATTACTTTAACATGGCATCGGGAGTTAAGAGCGCGTGCGCTGCTGCGCTTCTCCTCGCGTGGACTGTGCTTTCTAATCCCGCGAGCGCCTACCTCTACAACAACCGCTATGTCGGTGATCAGGTTCTGAGAATAATTCCCAGCAGTCCCAGGGAGCTCCATTATCTCAAACAGCTTTTTCAGAACATGACGGTGGACCTCTGGCAGCCCAGCAGCTCTAACCTTATCCACGAGGGCAAAGCTGTAGACGTCCATGTGGGACGAGACAGGACAGCACGTCTCAAAAATCTGCTTAGACGGGCGCACATTCAGCATGAACTGCTTATTACTGATGTACAGAGGGAAATGGAGAAACAGACGGGGTATCGGTCAAACAGAAAGCGCCGATCAGTGTTCCAGTACGATTATGAAGTGTATCATCCTCTGGAGGAGATCCAGAGTTGGATGTTTGAAATGAACCGGACACACCCACACCTGGTGGACCTGTTTTCTATTGGACGGTCCTACGAAGGACGGCCTCTTTATGTGCTCCAGTTAGGAAACCGAGTTCGGACCAGTAAGAAGGCCGTGTGGATGGACTGCGGTGTTCATGCGCGGGAATGGATCGGCCCTGCCTTCTGTCAGTGGTTTGTGAAGGAAGCTTTGAACTCCTATCAGCACGACTCCAGCATGAGGCGACTGCTAAAGCAGCTGAACTTCTACATCATGCCTGTCTTCAACGTGGATGGATATCACTACAGCTGGAAAAGTgATCGCTTTTGGAGGAAAACCCGATCCAAAAAAGCCAAGTACCACTGCCGTGGTGTCGATGCCAACCGAAACTTTAAAGTGAAGTGGTGCGAAGGCGCCTCCACACACCCTTGTGACGACACCTACTGTGGCCCGTTCCCCGAGTCCGAGCCCGAGGTGAAGGCCGTCTCCAGGTTCCTGCGCAAGCACAAGAAACACATGAGGGCTTATATATCCATCCACGCCTACGCTCAGATGCTCCTCTATCCTTACTCCTACAAATATGGCACCATCCCTAATTTTGACTGTGTGGAAACAGCAGCTCAGAGTGCTGTGAGTGCCCTTTACTCCGCATACGGAGTCAGATACAGATACGGCCCTGCCTCCACCACACTGTACGTAAGCTCAGGAAGCTCTATCGACTGGGCCTACAAGAATGGCATCCCCTATGCTTTCGCCTTCGAGCTGCGTGATACAGGTCATTACGGTTTCCTCTTGCCAGAGGCCCTGATTGGTCCCACCTGCACCGAGACTATGAGGGCAGTAAGGGCCATCGCCTCGGGCCTGCTGAAGAAATGCGCCGGATGAAGAAATATCactctgctcctctctctctctctctgtctctttctctatccTTCCCTGTGTGCCCCGAGCTCCAGCTCTGAGCGCTAACCTGTGCATGCTGGCTGTTTCCACCATGCCAAAATATGCTACGTGTATGTCCAGGAAAGCTGACGCTGGAATAATGCGCTGGAGATTTGGCTGGAGAACTTAATGttgctttgcaaaaaaaaaaacaaacctgtaTACTTAATAATTTCTATCATGCAGCGATTTTAGTGCCTGTACCTCATCATCAGTTGTCAGCGAAATGTAATGTTGCCTTAAATCGATGCACTTTTTGAGAAGTGTCTCTGTTTGTGAAACCTAGTACAGCTGTCGAGACAAAACCAGACCACTTTGAGCACTTGCCAAAATAAGAACCTCACGTCAATACAGTATGTAAGAACACAGACCAAAGAGTGTAAATATTGTATACTtgttttctatatatatatattttttataatctcTGGATGTCTATGTAACAGAACTAAATCTAGACTGTAGCTGGgtttaatgtgaaataagcTGAAATGATCCTTATTGTATTACAGTTATGtgatatgtaataaatgtgtattatactatatactataactTTTTggttagattttctttttaaaaaactagccttaatgatatttttacagGGTACTTAAGCAGAGGTGAGAAGTGACAAAGTAGAATTActtttgttactgtacttaataataataataatgctataaaattttgtttatttttggttttcGTTTTCATTCCTGTTCGGCTCATTTCGATTTCTAATCCCTGATTTAAATTCCTAATTTTAACAGATGTAAGAGCAAGAATGAGACCCAATCACTTGTATTGTAACAGCCAGCTATTAGCATTCAAATAGTTTATATggttattatcatgctagctaagaTTTAAGGAATTagcaataaagctgttgttCGTTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576975.1 lncRNA downstream 209773 16060280 ~ 16071498 (-) True LOC117595797
TU394080 lncRNA downstream 239759 16041312 ~ 16041512 (-) True G332797
XR_003404166.2 lncRNA downstream 296163 15979116 ~ 15985108 (-) True LOC113541293
XR_003404161.2 lncRNA downstream 338082 15935828 ~ 15943189 (-) True LOC113541266
TU393962 lncRNA downstream 650827 15630223 ~ 15630444 (-) True G332682
TU394528 lncRNA upstream 307842 16620758 ~ 16622013 (-) True G333175
TU394562 lncRNA upstream 326248 16639164 ~ 16640767 (-) True G333197
TU394831 lncRNA upstream 424252 16737168 ~ 16760431 (-) True LOC117595808
XR_004576992.1 lncRNA upstream 436632 16749548 ~ 16760423 (-) False LOC117595808
TU394846 lncRNA upstream 572291 16885207 ~ 16886322 (-) False myd88
XM_026938228.2 mRNA downstream 6760 16220089 ~ 16274511 (-) True arfgef1
XM_026938229.2 mRNA downstream 6761 16220089 ~ 16274510 (-) False arfgef1
XM_034297866.1 mRNA downstream 80820 16145537 ~ 16200451 (-) False relch
XM_034297865.1 mRNA downstream 80820 16145537 ~ 16200451 (-) False relch
XM_034297864.1 mRNA downstream 80820 16145537 ~ 16200451 (-) False relch
XM_034298006.1 mRNA upstream 374806 16687722 ~ 16699950 (-) True csrnp1b
XM_026937809.2 mRNA upstream 482094 16795010 ~ 16801971 (-) False LOC113541039
XM_026937808.2 mRNA upstream 482094 16795010 ~ 16801971 (-) True LOC113541039
XM_026937858.2 mRNA upstream 507313 16820229 ~ 16829385 (-) True slc22a13b
XM_034298107.1 mRNA upstream 516874 16829790 ~ 16879884 (-) True oxsr1b
TU393587 other downstream 1215461 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 1343867 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 3603338 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 3603338 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 5198120 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 517780 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 517780 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 803182 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 872608 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 1594978 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile