Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU394528 |
| length | 578 |
| lncRNA type | inter_gene |
| GC content | 0.52 |
| exon number | 2 |
| gene id | G333175 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 16620758 ~ 16622013 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU394284 | lncRNA | downstream | 307879 | 16312043 ~ 16312879 (-) | False | cpa6 |
| XR_004576975.1 | lncRNA | downstream | 549260 | 16060280 ~ 16071498 (-) | True | LOC117595797 |
| TU394080 | lncRNA | downstream | 579246 | 16041312 ~ 16041512 (-) | True | G332797 |
| XR_003404166.2 | lncRNA | downstream | 635650 | 15979116 ~ 15985108 (-) | True | LOC113541293 |
| XR_003404161.2 | lncRNA | downstream | 677569 | 15935828 ~ 15943189 (-) | True | LOC113541266 |
| TU394562 | lncRNA | upstream | 17151 | 16639164 ~ 16640767 (-) | True | G333197 |
| TU394831 | lncRNA | upstream | 115155 | 16737168 ~ 16760431 (-) | True | LOC117595808 |
| XR_004576992.1 | lncRNA | upstream | 127535 | 16749548 ~ 16760423 (-) | False | LOC117595808 |
| TU394846 | lncRNA | upstream | 263194 | 16885207 ~ 16886322 (-) | False | myd88 |
| TU394848 | lncRNA | upstream | 263194 | 16885207 ~ 16886322 (-) | False | myd88 |
| XM_034297874.1 | mRNA | downstream | 307842 | 16281271 ~ 16312916 (-) | False | cpa6 |
| XM_026938123.2 | mRNA | downstream | 307843 | 16281271 ~ 16312915 (-) | True | cpa6 |
| XM_026938228.2 | mRNA | downstream | 346247 | 16220089 ~ 16274511 (-) | True | arfgef1 |
| XM_026938229.2 | mRNA | downstream | 346248 | 16220089 ~ 16274510 (-) | False | arfgef1 |
| XM_034297866.1 | mRNA | downstream | 420307 | 16145537 ~ 16200451 (-) | False | relch |
| XM_034298006.1 | mRNA | upstream | 65709 | 16687722 ~ 16699950 (-) | True | csrnp1b |
| XM_026937809.2 | mRNA | upstream | 172997 | 16795010 ~ 16801971 (-) | False | LOC113541039 |
| XM_026937808.2 | mRNA | upstream | 172997 | 16795010 ~ 16801971 (-) | True | LOC113541039 |
| XM_026937858.2 | mRNA | upstream | 198216 | 16820229 ~ 16829385 (-) | True | slc22a13b |
| XM_034298107.1 | mRNA | upstream | 207777 | 16829790 ~ 16879884 (-) | True | oxsr1b |
| TU393587 | other | downstream | 1554948 | 14965813 ~ 15065810 (-) | False | LOC113541115 |
| XR_003404167.2 | other | downstream | 1683354 | 14936886 ~ 14937404 (-) | False | LOC113541102 |
| TU392350 | other | downstream | 3942825 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| TU392351 | other | downstream | 3942825 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| TU391338 | other | downstream | 5537607 | 11082268 ~ 11083151 (-) | True | G330379 |
| XR_004576965.1 | other | upstream | 208683 | 16830696 ~ 16879884 (-) | False | oxsr1b |
| XR_004576964.1 | other | upstream | 208683 | 16830696 ~ 16879883 (-) | False | oxsr1b |
| XR_003404146.2 | other | upstream | 494085 | 17116098 ~ 17139685 (-) | False | zbtb47b |
| XR_004576994.1 | other | upstream | 563511 | 17185524 ~ 17239106 (-) | False | vipr1b |
| TU395488 | other | upstream | 1285881 | 17907894 ~ 17908812 (-) | False | LOC113541127 |
