Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404172.2 |
| length | 636 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113541357 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 16888906 ~ 16890161 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006954 | inflammatory response | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0002755 | MyD88-dependent toll-like receptor signaling pathway | biological_process |
| GO:0002237 | response to molecule of bacterial origin | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0070976 | TIR domain binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU394614 | lncRNA | upstream | 58958 | 16732916 ~ 16829979 (+) | False | G333232 |
| TU394612 | lncRNA | upstream | 58958 | 16772003 ~ 16829979 (+) | True | G333232 |
| TU394501 | lncRNA | upstream | 255154 | 16605148 ~ 16633783 (+) | True | G333148 |
| TU394510 | lncRNA | upstream | 268848 | 16595781 ~ 16620089 (+) | True | G333157 |
| TU394160 | lncRNA | upstream | 667992 | 16219553 ~ 16220945 (+) | True | G332859 |
| TU394629 | lncRNA | downstream | 2845 | 16893006 ~ 16897855 (+) | True | G333244 |
| TU394762 | lncRNA | downstream | 295968 | 17186129 ~ 17186675 (+) | True | G333360 |
| TU395018 | lncRNA | downstream | 472710 | 17362871 ~ 17363075 (+) | True | G333548 |
| TU395063 | lncRNA | downstream | 556024 | 17446185 ~ 17447043 (+) | True | G333582 |
| TU395113 | lncRNA | downstream | 650476 | 17540637 ~ 17541761 (+) | False | rnf6 |
| XM_026937855.2 | mRNA | upstream | 70498 | 16805649 ~ 16818439 (+) | False | LOC113541068 |
| XM_034297857.1 | mRNA | downstream | 63523 | 16953684 ~ 16960846 (+) | True | acaa1 |
| XM_026937977.2 | mRNA | downstream | 94886 | 16985047 ~ 17014794 (+) | True | plcd1a |
| XM_034297855.1 | mRNA | downstream | 95251 | 16985412 ~ 17014794 (+) | False | plcd1a |
| XM_026937976.2 | mRNA | downstream | 96753 | 16986914 ~ 17014794 (+) | False | plcd1a |
| XM_034298161.1 | mRNA | downstream | 184052 | 17074213 ~ 17085476 (+) | True | spag6 |
| TU393912 | other | upstream | 1322274 | 15566175 ~ 15566663 (+) | True | G332636 |
| XR_004576981.1 | other | upstream | 1624350 | 15251635 ~ 15264587 (+) | False | si:ch73-173p19.2 |
| trnat-agu_17 | other | upstream | 3503663 | 13385201 ~ 13385274 (+) | True | trnat-agu_17 |
| TU392569 | other | upstream | 3630521 | 13257894 ~ 13258416 (+) | True | G331476 |
| TU392341 | other | upstream | 4176259 | 12706939 ~ 12712678 (+) | True | G331263 |
| TU394735 | other | downstream | 217311 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394736 | other | downstream | 217311 | 17107472 ~ 17110027 (+) | False | hhatlb |
| TU394798 | other | downstream | 394921 | 17285082 ~ 17300011 (+) | True | G333388 |
| TU394792 | other | downstream | 396999 | 17287160 ~ 17302004 (+) | False | G333388 |
| TU394797 | other | downstream | 396999 | 17287160 ~ 17295054 (+) | False | G333388 |
