RNA id: XM_026937901.2


Basic Information

Item Value
RNA id XM_026937901.2
length 2061
RNA type mRNA
GC content 0.46
exon number 12
gene id hhatlb
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17100164 ~ 17110027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGACAGCCTGGGCCACAGTGCTTCCCCTCACCAGCTCCGGATGTGTTAGAGATTTATCCtcgacagttttttttttttttttactttatttttctttgaatGTACTCTAGTTTTTGGGTGTCAAGGGGATTTTGGTTGATTTAAACGCCCAACTTGCTAAAGGTTGCTCAAGgTGCCTGGGGTGTGTGATTTTTGCTTACGCACAATGGGGATCAAAGCAGCTCTTCCTAAGTATGAGCTCTATTTTTATTATGTGGTGCTGTCCATGGCAATGCTCTGGGCGGCCAGTTGGATTTTTGAGGTGTCCAGCACGAATGCAAACCGGAAGTCCCTCAAGTCCAACATCCAGCCCGGATGGTACTACTTTGGCAGAAAAATGGACACGGCTGATTCGGAGTGGATGATGTGGTTCTCCACGTTCCGTGAGCACATCGTCTTCGCCCTGTCTGGCCATGTCTTATTCGCCAAGATCTGCTCCATGCTGGCTCCTCAGTACCGGTCTGTGGTCTACATGGTGTATGGTGCTCTTGCCATTCTCACGAGTATGGGTTGGACCTATGTGATGCTCATCCTCTCATACTGCGTGATGCTCTACAGCATCTCACTCGTCAAACTCCGCTGGCTCTGTTTCACCGCCGGACTCACCACGCTCGCCACTTTTAAGATGGAGCCTTTTGTTTCCTGGCAGGCTGGGTTCGTGAGCGGAGACTTTACTCTGCGCCCGGTGCTCTTTTATGGTGGCTGCGGCTTCACCATCATGCGCTGCCTGAGCTTCGCTCTGGAGAACTGTGAGAGGAAAGAGGGTCACTACAGCATCCTGGAGCTGCTCAAGTACAACTTCTACCTCCCTTTTTTCTACTTCGGACCCATCATGACCTTCGATAAATTCTATATCCAGGCTAATAATCCAGAATTGAGccgtaaagagagagagatgtggaaCATTTCCATCCAGGCCTTATTACACCTGGGAGTTATCATCATGGTGGCTATCATATTCCACTTCATGTATATTCTGACCCTTCCAAGTGACATGAAGCTGCTGAAACACCTCTCAGATTGGACTATcgCGGGTTTGGCGTACATGAATCTGGTGTATGACTGGGTGAAAGCCGCTGTGATGTTTGGTGTTATAAACACAGTGTCTCGACTGGACCACCTGGATCCTCCCAAACCTCCCAAATGCATCACAATGCTCTATGTCTTCTCTGAAACGCACTTTGATCGAGGAATCAATGACTGGCTCTGCAAGTACGTGTATAATTATCTCGGTGGTAAACATGATAATGTGCTGGATGAGTTGATCGCCTCACTCTGCACGTACGGCATCACGGCGCTGTGGCTCGGGCCGGGCTGGGTCGTCCTCATCTGGGCTTTCTTCAACTGCTTCGGCCTCAACTTTGAGCTGTGGATATCCAAGTTCTTCTCCATGGAGCCCTTCTTTACCATTGAGACGGCGATGTCTGAATCCATGTCTCGCAGAATTAGAGCTGTATTTAATACCTTCAATTTCTGGAGTATTGTCCTGTACAACATCCTGGTCCTCAACAGTCCTGACTTTGCAAAGCTGGTTGCCAGGAGGTTACTGCTGAAAGGTTTCCCCTTATCCACCATCACTGTGATGTTTGTGACCTATTGCCTGGTGCAGataataaaagagagagaaaggaagcaGGCTTTGATTGATGACCCTGATCCTGTACCTCCTCCAACCACCATCAAGCCCCAAACCGAGGCCTTAGCCACTGCTGTGGATCCCAACAAGGAAAAGTCAGAGTAGGAACACGTTACTCTGTTTAGACTATTTTTATGGGTTTGAGttgtttattgcaaaaaaaaaaaatcatagtggGGGGACACAGAATTACATAACTTAGAAAGTATATGAAGGGTTTTTACACAGAACAAATACACAACTAGCATGTGTAATTTAGTAGCTTATCATTGCAGCTGTTACATGATGGCACTGTTTACTGCAAATATGTTGAAAGATCTCTTATAACTGTACATAAACTCTTGCTCTAAGAAATAAAGACTGAAAATGTTTCCAAGTGCTTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394629 lncRNA upstream 203315 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 211009 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 211441 16888906 ~ 16889729 (+) False LOC113541357
TU394614 lncRNA upstream 271191 16732916 ~ 16829979 (+) False G333232
TU394762 lncRNA downstream 76356 17186129 ~ 17186675 (+) True G333360
TU395018 lncRNA downstream 253098 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 336412 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 430864 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 557863 17667636 ~ 17667844 (+) True G333787
XM_026938111.2 mRNA upstream 2825 17086210 ~ 17098345 (+) True gars1
XM_034298161.1 mRNA upstream 15694 17074213 ~ 17085476 (+) True spag6
XM_034298162.1 mRNA upstream 15694 17074213 ~ 17085476 (+) False spag6
XM_026938124.2 mRNA upstream 15694 17077631 ~ 17085476 (+) False spag6
XM_026937976.2 mRNA upstream 86376 16986914 ~ 17014794 (+) False plcd1a
XM_026937903.2 mRNA downstream 1995 17111768 ~ 17115776 (+) True klhl40b
XM_034298269.1 mRNA downstream 53227 17163000 ~ 17171598 (+) True sec22c
XM_026938204.2 mRNA downstream 53227 17163000 ~ 17171598 (+) False sec22c
XM_026938185.2 mRNA downstream 175331 17285104 ~ 17286736 (+) True LOC113541296
XM_034298096.1 mRNA downstream 177367 17287140 ~ 17290895 (+) True LOC117595788
TU393912 other upstream 1534507 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1836583 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3715896 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3842754 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 4388492 12706939 ~ 12712678 (+) True G331263
TU394798 other downstream 175309 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 177387 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 177387 17287160 ~ 17295054 (+) False G333388
TU394801 other downstream 177387 17287160 ~ 17300011 (+) False G333388
TU394805 other downstream 177387 17287160 ~ 17291065 (+) False G333388

Expression Profile