RNA id: TU394798


Basic Information

Item Value
RNA id TU394798
length 1806
RNA type TUCP
GC content 0.39
exon number 9
gene id G333388
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17285082 ~ 17302004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGCAGGGTTTGGATGTGGTTTTGTTTGGTACGCATTTCCTGTTGGGAGCGGCAGCTTGTGACTGTCCAGCCTGTTTGGTTACCTGGGGAAAGGTTTAGGAGCTTTAGACTAAAcaataattgtatttatttttgcttccaGACAAAGAAAATGCCTTTGTTGTGCGGAGGAACCACCGAGGCGAAGGACGCCACCGAGGAAGTGCAGAAAATCTGTGATGAGATGAAGCCTCATGCGGAGGAAAAAGCAGGAAGAAAGTTTGACGTCTTCACTGCTAAATCCTACAAGTCACAGGTGGTAGCTGGAACGAACTATTTCATCAAGGTCCATGTGGGTGGCGATGACTTTGTTCACCTGCGTATCTATAAGACGCTGCCACACGCTGGAGAAAAACTGACACTTCATGGAATACAGACACCCAAAGCCCATCAGGACCCCATCGAATACTTCTGAACATACACTCCATTAAGAAAGAGACACCATCGaaactgcactaacacacataaACAGTTTGGGACTCTTTACTGCTACAGTAATAATGGCTTTGTGTGGAGGGCTCGCCAAGGTGGAAGAGGCCACTGCTGAGGTGCAGCAAATCTGTGATAAGATGAAGCCTCATGCAGAGCAAAAAGCAGGAAGAAAGTTTCAAATCTTCACTGCTAAATCCTACAAGACACAGGTGGTAGCTGGAACGAACTATTTCATCAAGGTCCATGTGGGTGGCAATGACTATGTTCACCTGCGTATCTATAAGACGCTGCCACACGATGGAGAAAAACTGGCACTTCATGGAATACAGACACCCAAAGCCCATCAGGACCCCATCGAATACTTCTGAACATACACTCCATTAAGAAAGAGACACCATCGaaactgcactaacacacataaacaggaaCTGTATTTGAATTTGTATTCCATATGGAATGTCACTGGCTTAAAACTGAGTGACATTAATCACAACCTGTTTATTCCATCTTAATTCCTGAACTGACAAGAAATGAGCTGCTTCTTCAATTAATAGAAAGGCAGTGATAAATATCAGTCATTTACAATCTCTCAATTCCTTTTAAAATTGATCGAACAAATGGAGTGGTGTTTGGTATTTGATGTGTTTATAATGTGTCTATATGTCCATCTTGAAGAATGCAATACCTGTAATGagattaaagataaaaataaacattgacaCATGACCTCTgttttaatgtattcatttggcCAGAATTCTGTGGAAATATAATTAGATTAAATAAAGCAACTAAACCCTATGATGCCAGAATAATATTCCcatttactgtatgttattTGTTTAGCCCTACCCCAGAGTGTCTGCAGGTTatctcaatttaaaaataatactttttaagaCTATAATGCCACTCAAAAGGTGATTTTGGAGTAGCGCCTTTAAAAAGCCTCTCAAGGTGTTTTAcgcaggaaaagaaaatagaaatagaagTACATAGCATAAAACAAGTATATAAGCATGCAtcaaaaacagttaataattaaatgtaattcaaaataataataacaataatagtactactaataatttaataataaaaaaacaacagatacaTCAAGGAAAAGCTATCCTAAAGAAATAAGTTttgagagaagatttaaatgCGCTGAAAGACTGAGCTTCTCTAAGATCACATGCTAGTGAGTGCCATAGTTTTGGAGCACAAGAAGAAAATGCCCTATTACCCATAATATGTAAACGAGAATGAGGGACAGTTAAAAGACCAGAACTGAAGGAGCAGAGATCACGTTTTGGGGTGTAATGGGTTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394762 lncRNA upstream 98407 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 387227 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 394921 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 395353 16888906 ~ 16889729 (+) False LOC113541357
TU394614 lncRNA upstream 455103 16732916 ~ 16829979 (+) False G333232
TU395018 lncRNA downstream 62860 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 146174 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 240626 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 367625 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 370405 17670416 ~ 17670625 (+) True G333791
XM_034298269.1 mRNA upstream 113484 17163000 ~ 17171598 (+) True sec22c
XM_026938204.2 mRNA upstream 113484 17163000 ~ 17171598 (+) False sec22c
XM_026937903.2 mRNA upstream 169306 17111768 ~ 17115776 (+) True klhl40b
XM_034297884.1 mRNA upstream 175309 17100164 ~ 17109773 (+) False hhatlb
XM_026937901.2 mRNA upstream 175309 17101170 ~ 17109773 (+) True hhatlb
XM_026937860.2 mRNA downstream 10710 17310721 ~ 17315700 (+) True fam162a
XM_026938246.2 mRNA downstream 29823 17329834 ~ 17333509 (+) True si:ch211-161h7.8
XM_034298150.1 mRNA downstream 36181 17336192 ~ 17353309 (+) True drd3
XM_026938106.2 mRNA downstream 36181 17336192 ~ 17353309 (+) False drd3
XM_026938210.2 mRNA downstream 78290 17378301 ~ 17390639 (+) True ccdc191
TU394735 other upstream 175055 17107472 ~ 17110027 (+) False hhatlb
TU394736 other upstream 175055 17107472 ~ 17110027 (+) False hhatlb
TU393912 other upstream 1718419 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 2020495 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3899808 13385201 ~ 13385274 (+) True trnat-agu_17
TU395491 other downstream 686751 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 1015345 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 1015347 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 1015349 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 1015672 18315683 ~ 18323295 (+) True mtfr1

Expression Profile