RNA id: TU394831


Basic Information

Item Value
RNA id TU394831
length 2111
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC117595808
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16737168 ~ 16760431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgCATCTGATTGTGGGGTGGAGTGATACCAAACTATTGGATTTGGTTTCAAGGTGGTGCTATGACTGTTTTAGCActgtgatgtctttttttttgttgttcatttgtATAGATAATAATGTCAAAAACCACATAAGCATTCTGTTTGAGATGCAGCACAACTCAGCAAAGCCGTtcaagGAAGTGAAAACACAgcaagttcactcaggtacagACCAAAACAGCCAGTATGAAAGCATCTGAGCAAGAAGGTCTACTTCCAGTTAAACTCTAGCGTTATGACATGTACTACATGACACCTGCTGTAAGGCTCAATGAAGCACTCAAAAGGGCCGACTGATGCCAACTATGGACGAGGGCTGGCTTGCTGTGTCATGGCCCTGAAACATGGTATAGACTCACCTATTACTAGTGTGTTAACTAACACATCCCACCTATATTCAGCATGATGGAGCATCTTTGGGTGGATACAGCAAACATTTCAACTCTGTGAGAAGAAGCAAAGGACCACAGATACTAGATAGTGTAATGTGGGTGTCATTAGCATAAGggacattgttgttgttgttgtgtttttatttctggcaagtacactatatggccaaaagtatgtggacctctgaccatcacacccatatgtgctttttgaacatccgattccagatttagtccccgtttgctgttataataacctccacccttctgagaaggcttttgCTGGaaatttgggcctcttagttccagtgaaagaaaaCTATAATGCTATAGCATGCAAAGACACCCCGTACAACTGTGTGTATTaaactttatggcaacagtttggagaagaaccacatacgggtgtggtgctcaggtgtccacatacttctggccatatagtgtagtttaaTAAAACGCATGGTTCCGCCTTAACATCAGtcatttacagtttattcattAACCATATGGCCACTGTTTACGAATATCAGCTGTCCATAAATCATATCATCAATCATAAAGTGCCACAactgtttcatttcagttttgctAACACAAACAGAACAGTTCTGGCCAGATATTACTAATGCACAGGACGGGTTCCCAAATCAACTTTACACAATTTTCAGCTTAGgccaaatgtagtcaatcagccaagacatatTTGGTGTCTGGAATCTGATTATATGTAATCTCATTTTAAATGGATATGTATATGTAAGGAAGAGTTATCATATACAAATTGAAGCTAAAGTCAAACTACTGTCATTAGCTTTCAAACTTTCGGAGTTGAAGCGTAAAGAGCAAAACTCTGTGAGACTACTGAAACACTGGATATTGGCAGATATGCACAGCCTAAAATTTTTGTCTgagatagacttccattattGTTATCAAAATTAGCTTTGTTAGCTAAATTACCTTTAGTTATATTGTAAATCTAAGCAAGTGTGTCAAACATGCCTTGACTGACTGACTACAATTgggctaattattattattattattattattattattattatttttgccaaGCCTTTCcttacatatttaatttttttagaacATTATCTCTGAGATCTTTAAACACACTATTTTTAGTGCATATGAGCAAACACAACCTTGTAAAACTGAGAAACTTATCCATTGCAGTAGGGTTTTTGAAATAGTGTTAAAGGTCTTTGGAATGGTTTAATCTTGTAACAAGCCATGTGGGTTTGTACATCTGCTTTTTTTGGTATTCATCCCTCACTCTGGTGTAACTTCTGAACCGCCTTCATCACTCCAAATGTCCTGCAGAGCGATGCTCCTCCCTGCCCCCTCTCACTGCTTCAGAAGCTgcttaatcattttaatatgaaaGCTGTTAAGTGCCTCCAATAATTACTTTGATGAAACGGAGGGCATTTAAAGAGACTTCCACCCGAGCAGCTTTTCAACCATTCTTTTCATCATCCTTTCATCACTTTTGATCTTTTGCTTGTGCCCTCGCGCctgctctctgtttctgtctattATCAATCCACTGGTCTTATTTTTAATCTGTCCCTGACTGCCTCTCCTTTTCAGATGCATCTTAGTCACTGGTTTAACCCTTTCTTGTctgtttcagtaaaataaagtgtgtgtttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394562 lncRNA downstream 96401 16639164 ~ 16640767 (-) True G333197
TU394528 lncRNA downstream 115155 16620758 ~ 16622013 (-) True G333175
TU394284 lncRNA downstream 424289 16312043 ~ 16312879 (-) False cpa6
XR_004576975.1 lncRNA downstream 665670 16060280 ~ 16071498 (-) True LOC117595797
TU394080 lncRNA downstream 695656 16041312 ~ 16041512 (-) True G332797
TU394846 lncRNA upstream 124776 16885207 ~ 16886322 (-) False myd88
TU394848 lncRNA upstream 124776 16885207 ~ 16886322 (-) False myd88
TU394873 lncRNA upstream 129753 16890184 ~ 16890991 (-) True G333427
TU394874 lncRNA upstream 130697 16891128 ~ 16891364 (-) True G333428
TU394875 lncRNA upstream 131006 16891437 ~ 16891827 (-) True G333429
XM_034298006.1 mRNA downstream 37218 16687722 ~ 16699950 (-) True csrnp1b
XM_034297874.1 mRNA downstream 424252 16281271 ~ 16312916 (-) False cpa6
XM_026938123.2 mRNA downstream 424253 16281271 ~ 16312915 (-) True cpa6
XM_026938228.2 mRNA downstream 462657 16220089 ~ 16274511 (-) True arfgef1
XM_026938229.2 mRNA downstream 462658 16220089 ~ 16274510 (-) False arfgef1
XM_026937809.2 mRNA upstream 34579 16795010 ~ 16801971 (-) False LOC113541039
XM_026937808.2 mRNA upstream 34579 16795010 ~ 16801971 (-) True LOC113541039
XM_026937858.2 mRNA upstream 59798 16820229 ~ 16829385 (-) True slc22a13b
XM_034298107.1 mRNA upstream 69359 16829790 ~ 16879884 (-) True oxsr1b
XM_026938292.2 mRNA upstream 124720 16885151 ~ 16889424 (-) True myd88
TU393587 other downstream 1671358 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 1799764 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 4059235 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 4059235 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 5654017 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 70265 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 70265 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 355667 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 425093 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 1147463 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile