Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576992.1 |
| length | 310 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC117595808 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 16737168 ~ 16760431 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU394562 | lncRNA | downstream | 108781 | 16639164 ~ 16640767 (-) | True | G333197 |
| TU394528 | lncRNA | downstream | 127535 | 16620758 ~ 16622013 (-) | True | G333175 |
| TU394284 | lncRNA | downstream | 436669 | 16312043 ~ 16312879 (-) | False | cpa6 |
| XR_004576975.1 | lncRNA | downstream | 678050 | 16060280 ~ 16071498 (-) | True | LOC117595797 |
| TU394080 | lncRNA | downstream | 708036 | 16041312 ~ 16041512 (-) | True | G332797 |
| TU394846 | lncRNA | upstream | 124784 | 16885207 ~ 16886322 (-) | False | myd88 |
| TU394848 | lncRNA | upstream | 124784 | 16885207 ~ 16886322 (-) | False | myd88 |
| TU394873 | lncRNA | upstream | 129761 | 16890184 ~ 16890991 (-) | True | G333427 |
| TU394874 | lncRNA | upstream | 130705 | 16891128 ~ 16891364 (-) | True | G333428 |
| TU394875 | lncRNA | upstream | 131014 | 16891437 ~ 16891827 (-) | True | G333429 |
| XM_034298006.1 | mRNA | downstream | 49598 | 16687722 ~ 16699950 (-) | True | csrnp1b |
| XM_034297874.1 | mRNA | downstream | 436632 | 16281271 ~ 16312916 (-) | False | cpa6 |
| XM_026938123.2 | mRNA | downstream | 436633 | 16281271 ~ 16312915 (-) | True | cpa6 |
| XM_026938228.2 | mRNA | downstream | 475037 | 16220089 ~ 16274511 (-) | True | arfgef1 |
| XM_026937809.2 | mRNA | upstream | 34587 | 16795010 ~ 16801971 (-) | False | LOC113541039 |
| XM_026937808.2 | mRNA | upstream | 34587 | 16795010 ~ 16801971 (-) | True | LOC113541039 |
| XM_026937858.2 | mRNA | upstream | 59806 | 16820229 ~ 16829385 (-) | True | slc22a13b |
| XM_034298107.1 | mRNA | upstream | 69367 | 16829790 ~ 16879884 (-) | True | oxsr1b |
| XM_026938292.2 | mRNA | upstream | 124728 | 16885151 ~ 16889424 (-) | True | myd88 |
| TU393587 | other | downstream | 1683738 | 14965813 ~ 15065810 (-) | False | LOC113541115 |
| XR_003404167.2 | other | downstream | 1812144 | 14936886 ~ 14937404 (-) | False | LOC113541102 |
| TU392350 | other | downstream | 4071615 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| TU392351 | other | downstream | 4071615 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| TU391338 | other | downstream | 5666397 | 11082268 ~ 11083151 (-) | True | G330379 |
| XR_004576965.1 | other | upstream | 70273 | 16830696 ~ 16879884 (-) | False | oxsr1b |
| XR_004576964.1 | other | upstream | 70273 | 16830696 ~ 16879883 (-) | False | oxsr1b |
| XR_003404146.2 | other | upstream | 355675 | 17116098 ~ 17139685 (-) | False | zbtb47b |
| XR_004576994.1 | other | upstream | 425101 | 17185524 ~ 17239106 (-) | False | vipr1b |
| TU395488 | other | upstream | 1147471 | 17907894 ~ 17908812 (-) | False | LOC113541127 |
