Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026938292.2 |
| length | 1243 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | myd88 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 16885151 ~ 16889424 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006954 | inflammatory response | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0002755 | MyD88-dependent toll-like receptor signaling pathway | biological_process |
| GO:0002237 | response to molecule of bacterial origin | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0070976 | TIR domain binding | molecular_function |
| id | description |
|---|---|
| K04729 | MYD88; myeloid differentiation primary response protein MyD88 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU394831 | lncRNA | downstream | 124720 | 16737168 ~ 16760431 (-) | True | LOC117595808 |
| XR_004576992.1 | lncRNA | downstream | 124728 | 16749548 ~ 16760423 (-) | False | LOC117595808 |
| TU394562 | lncRNA | downstream | 244384 | 16639164 ~ 16640767 (-) | True | G333197 |
| TU394528 | lncRNA | downstream | 263138 | 16620758 ~ 16622013 (-) | True | G333175 |
| TU394284 | lncRNA | downstream | 572272 | 16312043 ~ 16312879 (-) | False | cpa6 |
| TU394873 | lncRNA | upstream | 760 | 16890184 ~ 16890991 (-) | True | G333427 |
| TU394874 | lncRNA | upstream | 1704 | 16891128 ~ 16891364 (-) | True | G333428 |
| TU394875 | lncRNA | upstream | 2013 | 16891437 ~ 16891827 (-) | True | G333429 |
| TU394880 | lncRNA | upstream | 64301 | 16953725 ~ 16955463 (-) | True | G333434 |
| TU394860 | lncRNA | upstream | 118403 | 17007827 ~ 17008733 (-) | True | G333417 |
| XM_034298107.1 | mRNA | downstream | 5267 | 16829790 ~ 16879884 (-) | True | oxsr1b |
| XM_026937858.2 | mRNA | downstream | 55766 | 16820229 ~ 16829385 (-) | True | slc22a13b |
| XM_026937809.2 | mRNA | downstream | 83180 | 16795010 ~ 16801971 (-) | False | LOC113541039 |
| XM_026937808.2 | mRNA | downstream | 83180 | 16795010 ~ 16801971 (-) | True | LOC113541039 |
| XM_034298006.1 | mRNA | downstream | 185201 | 16687722 ~ 16699950 (-) | True | csrnp1b |
| XM_026937850.2 | mRNA | upstream | 3560 | 16892984 ~ 16952065 (-) | False | map3k22 |
| XM_026937851.2 | mRNA | upstream | 3560 | 16892984 ~ 16938316 (-) | True | map3k22 |
| XM_034297854.1 | mRNA | upstream | 71429 | 16960853 ~ 16989036 (-) | False | dlec1 |
| XM_026938112.2 | mRNA | upstream | 71429 | 16960853 ~ 16981076 (-) | True | dlec1 |
| XM_026938113.2 | mRNA | upstream | 71429 | 16960853 ~ 16981075 (-) | False | dlec1 |
| XR_004576965.1 | other | downstream | 5267 | 16830696 ~ 16879884 (-) | False | oxsr1b |
| XR_004576964.1 | other | downstream | 5268 | 16830696 ~ 16879883 (-) | False | oxsr1b |
| TU393587 | other | downstream | 1819341 | 14965813 ~ 15065810 (-) | False | LOC113541115 |
| XR_003404167.2 | other | downstream | 1947747 | 14936886 ~ 14937404 (-) | False | LOC113541102 |
| TU392350 | other | downstream | 4207218 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| XR_003404146.2 | other | upstream | 226674 | 17116098 ~ 17139685 (-) | False | zbtb47b |
| XR_004576994.1 | other | upstream | 296100 | 17185524 ~ 17239106 (-) | False | vipr1b |
| TU395488 | other | upstream | 1018470 | 17907894 ~ 17908812 (-) | False | LOC113541127 |
| XR_004576970.1 | other | upstream | 1020514 | 17909938 ~ 17916556 (-) | False | c22h11orf65 |
| TU395529 | other | upstream | 1035651 | 17925075 ~ 17926835 (-) | False | zmp:0000000991 |
