RNA id: TU394860


Basic Information

Item Value
RNA id TU394860
length 305
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G333417
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17007827 ~ 17008733 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATTTTCTGCCAGATTCTTGGCTTTGCTCTCCTTGAAGGAGGACATCTCATAGCAGGCCTGTTTCTCACGTGAATGCTCGAAGCTGTTGAAATGGACACTCTTGCAGTAGATCACCAGGTCGGACAGCTCTTTAGCAAgcttgatcttttttttcCTTAGTTTTGGTCTCCTGTTCGCCCTGTTTGGCTTCAGCGGCTTCATCTTCTTCAGACACGCTGTCCACATCGTCCGTGTTGTTGTTAAATGCTACGTCCAGCTTGTTGAGGCGTTTACCTTTAACCAGGATCCGCCCCTTTAATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394880 lncRNA downstream 52364 16953725 ~ 16955463 (-) True G333434
TU394875 lncRNA downstream 116000 16891437 ~ 16891827 (-) True G333429
TU394874 lncRNA downstream 116463 16891128 ~ 16891364 (-) True G333428
TU394873 lncRNA downstream 116836 16890184 ~ 16890991 (-) True G333427
TU394846 lncRNA downstream 121505 16885207 ~ 16886322 (-) False myd88
TU394901 lncRNA upstream 21732 17030465 ~ 17030697 (-) True G333452
TU394903 lncRNA upstream 28434 17037167 ~ 17037512 (-) True G333454
TU394919 lncRNA upstream 77150 17085883 ~ 17086204 (-) True G333470
TU394977 lncRNA upstream 277020 17285753 ~ 17299701 (-) True G333525
TU394987 lncRNA upstream 277020 17285753 ~ 17291010 (-) False G333525
XM_034297854.1 mRNA downstream 18791 16960853 ~ 16989036 (-) False dlec1
XM_026938112.2 mRNA downstream 26751 16960853 ~ 16981076 (-) True dlec1
XM_026938113.2 mRNA downstream 26752 16960853 ~ 16981075 (-) False dlec1
XM_026937850.2 mRNA downstream 55762 16892984 ~ 16952065 (-) False map3k22
XM_026937851.2 mRNA downstream 69511 16892984 ~ 16938316 (-) True map3k22
XM_026938293.2 mRNA upstream 6891 17015624 ~ 17028893 (-) True vill
XM_026938294.2 mRNA upstream 6891 17015624 ~ 17028858 (-) False vill
XM_026938154.2 mRNA upstream 22127 17030860 ~ 17073642 (-) False ctdspla
XM_026938152.2 mRNA upstream 22127 17030860 ~ 17073642 (-) True ctdspla
XM_026937796.2 mRNA upstream 107365 17116098 ~ 17139685 (-) True zbtb47b
XR_004576965.1 other downstream 127943 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 127944 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 1942017 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 2070423 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 4329894 12676581 ~ 12677933 (-) False LOC113541288
XR_003404146.2 other upstream 107365 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 176791 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 899161 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 901205 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 916342 17925075 ~ 17926835 (-) False zmp:0000000991

Expression Profile