Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU394880 |
| length | 402 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 2 |
| gene id | G333434 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 16953725 ~ 16955463 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU394875 | lncRNA | downstream | 61898 | 16891437 ~ 16891827 (-) | True | G333429 |
| TU394874 | lncRNA | downstream | 62361 | 16891128 ~ 16891364 (-) | True | G333428 |
| TU394873 | lncRNA | downstream | 62734 | 16890184 ~ 16890991 (-) | True | G333427 |
| TU394846 | lncRNA | downstream | 67403 | 16885207 ~ 16886322 (-) | False | myd88 |
| TU394848 | lncRNA | downstream | 67403 | 16885207 ~ 16886322 (-) | False | myd88 |
| TU394860 | lncRNA | upstream | 52364 | 17007827 ~ 17008733 (-) | True | G333417 |
| TU394901 | lncRNA | upstream | 75002 | 17030465 ~ 17030697 (-) | True | G333452 |
| TU394903 | lncRNA | upstream | 81704 | 17037167 ~ 17037512 (-) | True | G333454 |
| TU394919 | lncRNA | upstream | 130420 | 17085883 ~ 17086204 (-) | True | G333470 |
| TU394977 | lncRNA | upstream | 330290 | 17285753 ~ 17299701 (-) | True | G333525 |
| XM_026937850.2 | mRNA | downstream | 1660 | 16892984 ~ 16952065 (-) | False | map3k22 |
| XM_026937851.2 | mRNA | downstream | 15409 | 16892984 ~ 16938316 (-) | True | map3k22 |
| XM_026938292.2 | mRNA | downstream | 64301 | 16885151 ~ 16889424 (-) | True | myd88 |
| XM_034298107.1 | mRNA | downstream | 73841 | 16829790 ~ 16879884 (-) | True | oxsr1b |
| XM_026937858.2 | mRNA | downstream | 124340 | 16820229 ~ 16829385 (-) | True | slc22a13b |
| XM_034297854.1 | mRNA | upstream | 5390 | 16960853 ~ 16989036 (-) | False | dlec1 |
| XM_026938112.2 | mRNA | upstream | 5390 | 16960853 ~ 16981076 (-) | True | dlec1 |
| XM_026938113.2 | mRNA | upstream | 5390 | 16960853 ~ 16981075 (-) | False | dlec1 |
| XM_026938293.2 | mRNA | upstream | 60161 | 17015624 ~ 17028893 (-) | True | vill |
| XM_026938294.2 | mRNA | upstream | 60161 | 17015624 ~ 17028858 (-) | False | vill |
| XR_004576965.1 | other | downstream | 73841 | 16830696 ~ 16879884 (-) | False | oxsr1b |
| XR_004576964.1 | other | downstream | 73842 | 16830696 ~ 16879883 (-) | False | oxsr1b |
| TU393587 | other | downstream | 1887915 | 14965813 ~ 15065810 (-) | False | LOC113541115 |
| XR_003404167.2 | other | downstream | 2016321 | 14936886 ~ 14937404 (-) | False | LOC113541102 |
| TU392350 | other | downstream | 4275792 | 12676581 ~ 12677933 (-) | False | LOC113541288 |
| XR_003404146.2 | other | upstream | 160635 | 17116098 ~ 17139685 (-) | False | zbtb47b |
| XR_004576994.1 | other | upstream | 230061 | 17185524 ~ 17239106 (-) | False | vipr1b |
| TU395488 | other | upstream | 952431 | 17907894 ~ 17908812 (-) | False | LOC113541127 |
| XR_004576970.1 | other | upstream | 954475 | 17909938 ~ 17916556 (-) | False | c22h11orf65 |
| TU395529 | other | upstream | 969612 | 17925075 ~ 17926835 (-) | False | zmp:0000000991 |
