RNA id: TU394988


Basic Information

Item Value
RNA id TU394988
length 1043
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G333525
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17285753 ~ 17301996 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAAATCACCTTTTGAGTGGCATTATAGtcttaaaaagtattatttttaaattgagatAACCTGCAGACACTCTGGGGTAGGGCTAAACAaataacatacagtaaatgGGAATATTATTCTGGCATCATAGGGTTTAGTTGCTTTATTTAATCTAATTATATTTCCACAGAATTCTGgccaaatgaatacattaaaacAGAGGTCATGtgtcaatgtttatttttatctttaatctCATTACAGGTATTGCATTCTTCAAGATGGACATATAGACACATTATAAACACATCAAATACCAAACACCACTCCATTTGTTCGATCAATTTTAAAAGGAATTGAGAGATTGTAAATGACTGATATTTATCACTGCCTTTCTATTAATTGAAGAAGCAGCTCATTTCTTGTCAGTTCAGGAATTAAGATGGAATAAACAGGTTGTGATTAATGTCACTCAGTTTTAAGCCAGTGACATTCCATATGGAATACAAATTCAAATACAGttcctgtttatgtgtgttagtgcagtttCGATGGTGTCTCTTTCTTAATGGAGTGTATGTTCAGAAGTATTCGATGGGGTCCTGATGGGCTTTGGGTGTCTGTATTCCATGAAGTGCCAGTTTTTCTCCATCGTGTGGCAGCGTCTTATAGATACGCAGGTGAACATAGTCATTGCCACCCACATGGACCTGCAAAATACATTTGTCAGTGGCCATCAGGTAGAAGCTATTATTTGAAGTAAAAGGGCTTCAAGTCTATTCAATAGGAGACTGTGAGTGAGTTTGTGTCCTACCTTGATGAAATAGTTCGTTCCAGCTACCACCTGTGTCTTGTAGGATTTAGCAGTGAAGATTTGAAACTTTCTTCCTGCTTTTTGCTCTGCATGAGGCTTCATCTTTATCACAGATTTGCTGCACCTCAGCAGTGGCCTCTTCCACCTTGGCGAGCCCTCCACACAAAGCCATTATTACTGTAGCTGTCAGAAACATGAATTAGACAAAACAATTAGTTCAACTTAACTGTACTAAAACTCCAAAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394919 lncRNA downstream 201052 17085883 ~ 17086204 (-) True G333470
TU394903 lncRNA downstream 249744 17037167 ~ 17037512 (-) True G333454
TU394901 lncRNA downstream 256559 17030465 ~ 17030697 (-) True G333452
TU394860 lncRNA downstream 278523 17007827 ~ 17008733 (-) True G333417
TU394880 lncRNA downstream 331793 16953725 ~ 16955463 (-) True G333434
TU395143 lncRNA upstream 83262 17378296 ~ 17378572 (-) True G333649
TU395144 lncRNA upstream 85821 17380855 ~ 17381236 (-) True G333650
TU395146 lncRNA upstream 88708 17383742 ~ 17384023 (-) True G333652
TU395147 lncRNA upstream 90245 17385279 ~ 17385646 (-) True G333653
TU395150 lncRNA upstream 94420 17389454 ~ 17389741 (-) True G333656
XM_026938267.2 mRNA downstream 5633 17277404 ~ 17281623 (-) True si:ch211-161h7.5
XM_026938256.2 mRNA downstream 11128 17266256 ~ 17276128 (-) True si:ch211-161h7.4
XM_034298305.1 mRNA downstream 48140 17191319 ~ 17239116 (-) False vipr1b
XM_026938244.2 mRNA downstream 48150 17191319 ~ 17239106 (-) True vipr1b
XM_026938200.2 mRNA downstream 126049 17142461 ~ 17161207 (-) True nktr
XM_034297896.1 mRNA upstream 10121 17305155 ~ 17309921 (-) True ccdc58
XM_026938088.2 mRNA upstream 21486 17316520 ~ 17329657 (-) True kpna1
XM_034298202.1 mRNA upstream 69607 17364641 ~ 17378007 (-) False qtrt2
XM_026938253.2 mRNA upstream 69607 17364641 ~ 17378007 (-) False qtrt2
XM_026938252.2 mRNA upstream 69607 17364641 ~ 17377985 (-) True qtrt2
XR_004576994.1 other downstream 48150 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 147571 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 407372 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 407373 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2221446 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 612860 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 614904 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 630041 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 1084002 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 1084615 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile