RNA id: TU395018


Basic Information

Item Value
RNA id TU395018
length 205
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G333548
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17362871 ~ 17363075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggacacagtaaggaataaaaaggtTTTCTTTACTCACTAGGCACAGCCAAAAAGTCCCAAACGGGGAACTTTCGAGCCTTTTTGactttttccttctttgttgATTTTATGCACCACTATGATTTATGACACAGCACAAAGTCACCTACAAAGACATGCTCCATTACACTGACTTAACTTTCCAGACTTAAACAGAGCGCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394762 lncRNA upstream 176196 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 465016 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 472710 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 473142 16888906 ~ 16889729 (+) False LOC113541357
TU394614 lncRNA upstream 532892 16732916 ~ 16829979 (+) False G333232
TU395063 lncRNA downstream 83110 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 177562 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 304561 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 307341 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 344647 17707722 ~ 17712380 (+) True G333779
XM_034298150.1 mRNA upstream 9562 17336192 ~ 17353309 (+) True drd3
XM_026938106.2 mRNA upstream 9562 17336192 ~ 17353309 (+) False drd3
XM_026938246.2 mRNA upstream 29362 17329834 ~ 17333509 (+) True si:ch211-161h7.8
XM_026937860.2 mRNA upstream 47171 17310721 ~ 17315700 (+) True fam162a
XM_026938186.2 mRNA upstream 63481 17296573 ~ 17299390 (+) True LOC113541297
XM_026938210.2 mRNA downstream 15226 17378301 ~ 17390639 (+) True ccdc191
XM_034298218.1 mRNA downstream 15226 17378301 ~ 17390639 (+) False ccdc191
XM_026938140.2 mRNA downstream 68971 17432046 ~ 17434825 (+) True urad
XM_026938141.2 mRNA downstream 69709 17432784 ~ 17434825 (+) False urad
XM_026937820.2 mRNA downstream 87648 17450723 ~ 17466452 (+) False lnx2a
TU394792 other upstream 60867 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 61174 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 62860 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 62860 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 67817 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 623687 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 952281 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 952283 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 952285 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 952608 18315683 ~ 18323295 (+) True mtfr1

Expression Profile