RNA id: XM_026938240.2


Basic Information

Item Value
RNA id XM_026938240.2
length 4254
RNA type mRNA
GC content 0.50
exon number 4
gene id rnf6
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17535944 ~ 17542387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGACCAAGCCCACCTCCTGTGCGAGGATTGGTTAGTGGTTTGTACCCGCAAACAGTCCACCGATTGGATGGGTTGCTCTATACATTAACCAATCCTGGCGCAGAAGGCGGGGTACTAGCGCGTCTATCCAATCAGAGTGTAGGAGGCAGGATTTGTTGTAATGCGGGTGGGAGAAAAAGATAACGCACCTAGGCTACATTTGTAATCAGAGCGAAGAGGAAAGAGGACTCGTCCATATTATAGCTGCTGTTTCAGTGGTTTCCGTGGTGATGGACCCTCCCGGCGGGCGAGACGAGCGTCGCCGTCAGGCCGAACGTCTTCGGCGGGAGGAGGCGTACTACCACTTCATCAACGAGCTGAGCGAGGAGGAGTATCGGCTCATGAGAGACAGCAACCTGCTGGGCACACCGGgtgaagTCACAGCTGAGGAGCTGAGACAGCGTCTGGATGGAGCGAAGGAGCGCGTGTCCTCACAGCCTCGCCCTGAATCACGTCCGCAGAACAGCGAGGCGGGACAGGAAGGCAGCAGtgCTGCGGCTGAGCCGGGCGCTGAGAGCACTAACGGAGACTCTCTGCTGGAGTGGCTGAACACGTTCCGGCGCACAGGCAACGCCACCCGCAGCGGCCAGAGCGGCAACCAGACATGGCGCGCCGTCAGCCGCACGAATCCAAACAGTGGCGAGTTTCGCTTCAGCCTGGAAATCAACATCAATCACGAGCAGCCCGAGCCGGGGGAACACAGCGACGCCTCTGACCCCGTCGAACTTCCTGTTCCGCAGAGGGCCTCTGCATCTATACGCAATCCGCCGAGGCCCGCACCCTATTCCACTCAGCACCCCACCCCTTATTCTACAACCAGGCCCACTCTAGGGAGGCGGGCTCAGGCACGGCGCACTCGCAGTAGCACTACCCCACCCATAACCCCGCCTCTGATCTCGCAGACGCCATATACGAGTTTGAGGAGGAACCTTGCTTTGCCTCAGCCAGCActgcttcctcctcctcctccccccaCTCTCCCTTCCTCCCAGGCCACACCCACATCCCTGCCTCAAGAGCAGGATAGTACTAACAGTGTGCAGAGTCAAATACAGCCACACCCTCCTTCACTTAGTAACGAGGAGGAGCAGGAAGCTAACGATGCTCCAGACTGTCCGGAAGCTGTGTCTCAGGCCAGTGCGCAGGGGGTGGCAGCTAGCCGTGAGGCTCGCAGAACTCGTTCACGTGGCCGGGTCCGCCGGATAGCTCTGTCCCGGTCCTCACGTCGTAGCCGCTCACCTCTGGATAGAAACTCCGCCCGAAGCTCTAGTCCCACCCCCAGCAACAGTGCTCCCGCGATAGAGTCCACTGGAAACACGgcggctgctgctgctgctgctgctgtggagATGGTGGAACTTCCTGCTGAGCCGACAGCACCGGTGGAATCTGCCCCCGAAGTGGGCACTGAGGAAGGCGAGACGCCTGCGTCAGGTGCAGCAGGAGGCGTCCGCCGGCATCCGACTATCATGTTGGATTTGCAGGTGCGCCGAATCCGGCCGGGTGAGAACCGAGACCGGGATAGCATCGCCAGCCGCACACGGTCTCGTGCTCGCGCCGCTGAAAATACGGTCACCTTCGAGAGCGACAGCGGAGGCTTCAGACGGACCATCTCGCGCTCGGAACGTGCCGGCATCCGCACCTACGTAAGCACTATCCGCATTCCTCTGCGCCGCATCTCCGAGACGGGTTTGGGAGAGCCGAGTTCCACAGCGCTGCGCTCCATCCTGCGGCAGATCATGACAGGCTTCGGAGAGCTCAGCTCGTTAATGGAGACCGAGGCAGACCCGGAAGGCTCCACCCCCGGACAGAATGCGGGCATCAACGCGGCAGCTCAGACACAGCGTGCGCAGAGTGGCGAAGCCACAACAGGGAGCGCTGTAACCGATTCGGGGCGAGAGGGTGGAGCAGTGGGTGAGGCTGGCCAGGCGAGGGTGGGCACCAACGGGCGGGACACGAATAACCTGGTTGAGAACGGCACCTTACCCATCCTGCGGCTGGCGCACTTCTTCTTGCTGAACGACGAGGAGGATGACGAGCATCCGCGCGGTCTCACCAAAGAGCAGATCGACAATCTGGCCACGCGCACCTACGGCCAGGCGAGCCTGGAGGGCGAACAGGGGCGTGCCTGCAGCGTGTGCATCAACGAGTACGCGCAGGGAAACAAGCTGCGCAGCCTCCCCTGCGCACACGAATTCCACATCCACTGCATCGACCGCTGGCTCTCGGAGAACAACACGTGCCCCATCTGCAGGCAGCCCATCCTGTCCAGCCATCAGGACTGACTCACTTCCTCCATCGCTCCTGTACATAGCGCTTCAGCTGTTCCACCCGTTCCTTCATCAACTCCCCCTGTATTCAGCTGTAGGTAGAACCAAAAGAAGAAACAACACAGAGAATTaacaaagctttatttttttagacctgtttttttttttttcttctcctgtctgCGTAGTCCCCTCCATTCTGCTTCAGGGTTTTCCGTTAACAAAACACAGCAGATATTAACTGTGATGAATCAGTGTTAGCAAAAGCTAATCTTCAGCATTTCACTTAATTTCATGAAATGGATTTTATAGATTGATCTGTACATTGCAGACTCTGAggatatgtaaatatatgaatgcctgtgcttttttattttttttgcgaGAGTTTGACATTGAGACACAGTATAGAACCATGCGTAAGATAAGCTCCTCTTGAAATCTGTTTGAACTTTAGTTTTACGGCACGCTCTCTTAGCAGAATGTTCCATTTTTAAAGCTCTTAACACGTTTAGCGCGTTGGCAGTCAGGGTGTGGTGACGGAACCCTACTCTGATTGCAACAAATTCATGGTTTTAAGATTATAGTAATTGAAACGGCAACGAGCCACTTAACACTACATGCTACAGTGATATGGACtgaatttttttccacttcacatTTCTGATGCTTCACCATGcagattatttaataatattttgtctgcCCCATTGCGTGCATGCGTCATTTTAAATTTGccgattgttttttttttaacctgtgtGTGAATATAATGCCAGAACACAGGTCATTATTTTAATGAGTGATAGATAATCAGTTCGTTATTCTTCTTAAAGCACTTGCAGGAGGAGTTTTAGGATAAGAAATTGTTTTGCCTCTGACGGGCCAAACTTTTAAAATAGGTGCAATGATAGAAAAAAAGAGTGGATGATTTTAAGTCCCTGTGTTTAATGCTATTTTTAAGTTTACCCCAAATGTTAAGATTTCTCGTTCAGCTCAGCTTGTTACTGACATTTGAGTTCTTTGacggttatttaaaaaaaaacaacttttttttaaagttacatGACGTTGTCTTCCAGGTCCTTTTTCCCCCCTGCCTCCTGTTTATAATGGATTTTCCCCGTGTCCACTCCCCTGCCGTTTACAGTGAATATAACAGGCCCAACAGTCAGCCGTATTCAGAACATCATCAGAGCACAGGGACAGGCTGCgtcattgctattattattattattattattactattattattattactgttattatgaatattatgaaCTTGTCTCCAAACTTTAACTTTTAATGAAGGTGACAAATATGAATTGGTCTcttaagaacttttttttttttttttttttttttctttctttctttcttctagaAAGTGCTTAAAGGGCAtctgatgataataatgagCTTATTATGGTTCTGTGTTCTCATCCTCTGTGCATGAACAGGGttgtaatatacacacacacacacaccgcagccTCGTTTCCTTCTAAGCAGACGAATCGGTACGCTTCTCAACAAACCTTTACATTATGCCTCAATGTCTTGTTTAAAGGAAACAGTAGGAAAGAAAGTGGTTTCCTTAATGTTTTCTTTCCAGATGTAGTGGAATATACTTATATTTTGAGTGTATGTCGcaaaggatgtgtgtgtgcgtgcgtgcggcgcgtgtgtgtgtgtgcgtgtggatATGTATGAAATTGCGAGTATGCTAGTGGTCATTCATCCGAGAGCGCGACGGGGTCTTTGGCCATTAAAAATCCagaatgatttatttagttCTTATTTAATAAGGTAAGAAATGACCTTGAGATATGAATATGTATTATGTTCTAATGTGATGCTAAAAACAGTTACGGATATGTATTCTGTTACTATGTaataaaatgagcaaatgaGTTTTCTTTTCTGCTCCTTAAAATTAAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395063 lncRNA upstream 88901 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 172869 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 349269 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 638089 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 645783 16888937 ~ 16890161 (+) True LOC113541357
TU395303 lncRNA downstream 125249 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 128029 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 165335 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 199014 17741401 ~ 17745040 (+) False G333795
TU395312 lncRNA downstream 200891 17743278 ~ 17756282 (+) True G333795
XM_034298075.1 mRNA upstream 32241 17496077 ~ 17503703 (+) True gpr12
XM_026938072.2 mRNA upstream 43626 17483693 ~ 17492318 (+) True usp12a
XM_026937820.2 mRNA upstream 69492 17450723 ~ 17466452 (+) False lnx2a
XM_026937819.2 mRNA upstream 69492 17452164 ~ 17466452 (+) True lnx2a
XM_026938140.2 mRNA upstream 101119 17432046 ~ 17434825 (+) True urad
XM_034298181.1 mRNA downstream 1436 17543823 ~ 17605193 (+) True atp8a2
XM_034298182.1 mRNA downstream 1437 17543824 ~ 17605193 (+) False atp8a2
XM_034298184.1 mRNA downstream 14105 17556492 ~ 17605193 (+) False atp8a2
XM_034298183.1 mRNA downstream 14947 17557334 ~ 17605193 (+) False atp8a2
XM_034298185.1 mRNA downstream 22742 17565129 ~ 17605193 (+) False atp8a2
TU394792 other upstream 233940 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 234247 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 235933 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 235933 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 240890 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 444375 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 772969 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 772971 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 772973 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 773296 18315683 ~ 18323295 (+) True mtfr1

Expression Profile