RNA id: TU395151


Basic Information

Item Value
RNA id TU395151
length 252
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G333657
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17389862 ~ 17390113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAAATCGACTCTCTAAAACACGTTGCTGCATCTGAAAAGCTGAAAATGGAGCTGACAGTAGCTTAACAAATGGGCTATAGCTACAAATTCTACTTGTTTACCATTTTCCAGCTGTATAGGGCTCGCCGGAGCAGAATGCACTCATATAGATGGTCTGCACGGCTCTTTTTCTCCGCCAGTGCCTCGTCTGTTGTGTGTAGCCAAAACAGAAGGCAGCGTCTTTGTAGAACCTGTGTGTGATGCGCCACAG

Function

GO:

id name namespace
GO:0060485 mesenchyme development biological_process
GO:0048368 lateral mesoderm development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395150 lncRNA downstream 121 17389454 ~ 17389741 (-) True G333656
TU395147 lncRNA downstream 4216 17385279 ~ 17385646 (-) True G333653
TU395146 lncRNA downstream 5839 17383742 ~ 17384023 (-) True G333652
TU395144 lncRNA downstream 8626 17380855 ~ 17381236 (-) True G333650
TU395143 lncRNA downstream 11290 17378296 ~ 17378572 (-) True G333649
TU395207 lncRNA upstream 151733 17541846 ~ 17542352 (-) True G333700
TU395479 lncRNA upstream 509726 17899839 ~ 17902383 (-) True G333932
TU395481 lncRNA upstream 512520 17902633 ~ 17902855 (-) True G333934
TU395486 lncRNA upstream 515795 17905908 ~ 17906806 (-) True G333939
TU395528 lncRNA upstream 534378 17924491 ~ 17924789 (-) True G333971
XM_034298202.1 mRNA downstream 11855 17364641 ~ 17378007 (-) False qtrt2
XM_026938253.2 mRNA downstream 11855 17364641 ~ 17378007 (-) False qtrt2
XM_026938252.2 mRNA downstream 11877 17364641 ~ 17377985 (-) True qtrt2
XM_026938088.2 mRNA downstream 60205 17316520 ~ 17329657 (-) True kpna1
XM_034297896.1 mRNA downstream 79941 17305155 ~ 17309921 (-) True ccdc58
XM_026938211.2 mRNA upstream 542 17390655 ~ 17397944 (-) False zdhhc23b
XM_034298220.1 mRNA upstream 542 17390655 ~ 17397925 (-) False zdhhc23b
XM_034298219.1 mRNA upstream 542 17390655 ~ 17397925 (-) False zdhhc23b
XM_026938214.2 mRNA upstream 542 17390655 ~ 17397925 (-) False zdhhc23b
XM_026938213.2 mRNA upstream 542 17390655 ~ 17397925 (-) True zdhhc23b
XR_004576994.1 other downstream 150756 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 250177 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 509978 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 509979 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2324052 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 517781 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 519825 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 534962 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 988923 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 989536 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile