RNA id: TU395294


Basic Information

Item Value
RNA id TU395294
length 4659
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G333779
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17707722 ~ 17712380 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGACGGGGTGGTGAAAGAATAGATCCAAATCGGTTATTTAGCGGAGTAGTGCTACTCTTATCAGCACTTGGACTGGTAAATATCTGGTtagaaaaatactgtaaagGAATCTCATTTGGAAGGCTTGGATGAGCAGCAGGTGAATATGAGGGATAGAAAGAAGGGAGAGTGTTCTGAGGCTCTACAGGAAGGAGAGCAGGGGTACGTGAGGCACTGGGCTGCGTGACTGGGGGAATGAAAGATGCATTTGCATTAATCGGAGGTGGAGGGTTCATACCTCCCTCACCAATAAAGGGAAAGCCAAAGTTCTGGGTGAGATGCTGATCTGAAACCAAGTTGCTGTCACTGCCAACCTGCGCACCATCCGGCATAAAACGCACAATACTTCTGCGCCGAGATTCACCACCTGTCTGTGGCCGTCCAAGCAGTACTCCCCCACCTGATGGAAGCGGCAATGGACTTTCAGGCTCAAAAGTGTTTACAGGTCTCAAGTTGCCAGACCTTGGTCTATCTCCTGGGCGGATTTTTGAGCTTTGTGGATCTGGTCCAATATGATGGGCTCTCTGACTGACAGCTGAAAGTGACCTGGAAGAGCCTTGAGCACGGCCTGTATCCGAGCTACTGTGCGGTGTTGATGGAGGATGGGGCAGAACTGATCTTACAGATGAACCATGTAAATTTCCACTAACCTGAGAAATGTGCCCTTTATTGTTGTCCCCAAGATGCATGGGAGGAGCTGTCTGTGTAGGGTGCAAGTTAGGGCTTGAGACTTTAGCCTGAAGTTCCCCAGAAGAAACTCCGGGCAGGCAGTTGTACTCTATACTCACTGGGGGACAGCCTTGTGCAGCCCTCTGGTGTCCAGTTTGTTCGGGAAGATGTGGACCCAATAGACTTTGCATGAAGCTCTGATGACATGAGTCCTGGTCACGTGGCAACCCTGCTCCAGTTTGTAGCCCCTGTGCTGAAGGATGTGTCCCATATGTACCACGACTACGTCCATCACCAGAAGAACCAGCCCCCATTCTAAATCCGGTTTGTGGCTGAGGACCCCTCTGAGCTGTAGCCACAGATTTACTGGTCATATCTCCACTGCGAGACACTTGCACTTCAAAGTTGTTTACTTGAGGCCCATTACCAAGAGTCTTGAAAGGTAAACGCTCCGATATCCGCTGAATGTCTGGAGCCCCCGAGTGTTCTTGGGCTAGTCTGCCTTGAGGATTATGACTAATATTTCCTTTGCCATGTGAGGAGTCGACATAACCTTGTAATTCAGACTGATCCTGTGAATTGCCACGAGCGGTCTGCAATGTATGAAGTCCCATACGTTGGTCACCAGCGGTTGAAGTCTTCCCAATAAGCGCCTCAGCAGAATAACTAGACAGCCGATGACGCTCCTGTCGTGATGGAGTACAAGCAAGGTCTGAAGAGCGAGATACAGGATTACTAGCCTGTGAAGATAGTTGCTGCTCTAAAGTGCGAGAACCCATTAACCTTTGCATAGCTCCATGATCCTGTCCTGGCTGGCGGTCTTGCTGACTCAAATGGTTGTTCTGATGAGCCCTGGGGCCTGCTTGACCCTCACAATTCTTTTCCTGTCTACTAAAGTGTTGTTGTTGCTGAAGTTGTTGCTGAAGATGTTGATGCCTAGAATGTGAACCCGGTTGCTGCatttgttgctgctgttgttgctgctgctgttgaagctgctgtggtttttgttgttggtgttgtggttGCTGCTGATGTTGGTGTTGCTGGgactgttgctgctgctgttggtgttgctgagcttgctgTTGGTGCTGCTGAGACTGCTGTGGTGGTTGATGCTGTACACCATTCTTCTCCAAGTGATGCTGCTTCTGCAAATTAACAGGAGGTCCTGTCTGACCACCTCGCACGACTCTCTTTTTATGGACATTCTGATCTTGTAGCAGAGTCCTCTGTTGAATATTGTGGATCTGGGTGTCGGGTTGTGTAAGGTGATGCTGAAGTTGGTAGAGGTGTCTCTGTtgttcttggtgatgttgaTGTTTGAGATAATGGCTTCCTCCCGTGATCTGTCCAGATTGTGGTGTGCTATGCTGTATGTGTCCCTGTTGTAGGTGCAGCACACTAGGTTGATTTTGTTCATGTGGTGCCAGTTGAGGAGGGCAGTGTCCTTCAGATGGGCGAAGTACAGTGGTCATAAAAGTGTTTCCTGAAAACAGGGCACCTCCTCCATCAGAATGGTTCCCAGTCATAACTGATGAGGAATTTGGGGGCATTTGTCCAGCCATCGCTTGGACATGTTCTGTCCCCTTAACATCTATCCGAGTGATACTACCAGCTGGGCATGGTTTTGAGCGCTTGTTTATGGGAAGAACAAGGTCCTCTTGGGCAGACCTTTTTGGCATATCCTTCTGATGACGTTCAGATATCCCAGCACCTATGTGAGTTCTCATAAGTGCACTTTTCAAAGGTGTATATTCATTAACTTGTGCTGGGCCAGAGCAGCCTTGGGTGACCTGAGATGATGTCTGAGACACTAGAATTGCTGCTCCCCCTGGTGATTGAACAGATACTTGCTGACCAAGGTTTGGAGACCCTGGGTAAGACTGGACAGAGCTTGGCCTGATGAGATTATTAACATTTAGACTAGTGAGTGTACTAGATTGTGTCTGAGAATAAGCTGTGTTCATTTGAAGCCGGACACCAGATGTACTAATGCCAGAAACCTCAACTACTGATGGAGTCTTTGACACTGTTATGTCACCTTGATTTGCCTGCTTTAACTGCTGACTTGTGACCCTTTCTTTAATTATTGGggtttgctgtgtttttggGAGTTCCCATCTAGTGGCAGTTGTACTTGATGGGTTGTCACCACTGCAGCTATCATTCTTCCTTCCTGGGCTGTCTTGTTCAAATATAGCTCTTGCAGCCATTGCTAAGAGTTCTGCCTGCTCAGAGGTGAAACTAAAAGATCCAAATGTATTAGGAGATGCAGTAATATTCTGACCTGTTGGAAGCagtgatgcaacagaaaagccTCTGTTATTTGAAGCTCCTGCTGTTGGTGAATCAGTCTGTCTATTTGCCACTAGTGAGGAATCATATGATTCATTTCCCATTGTTGATACCTCCTGTGAAAGAACAGTTTctttttgcaagaaagaatcTGCTTCAGATATATTCTCTGTTGTAGCACTTGAATGTTCACCTCTTCTGAGTTCTTTGCTTGAATTTGATTGACTAAGTTTGATACTAACAGAATGAATCTGACTAGCAGTTGTCACAGACATATTAACTTCTGAATGTTTAAGAAGCTTGTTGAATGTGTCCAAATTCCTGGATTCCCGGTGTAGAACTGGTGGTGTTGTATCTGATGGATCTGAACAAGTTGATGATGAGGAGTGCAAAGCAAAAGGTGTCTGCATCTGTGAAGTGTCTGCAGCTTTAACTATTGCAGGCTGTGTTTGAACCTGTGGAACCTTCTCTAAGAGGGATCCTGTTTCTAGACTCTTTGTTGGATCAGCACTTGTGCCAGCAGGTATGCTCTGGGGTTGGAGAAGGGCAGTTTCAACAGATGAAACCTTCAAATTATTTTCTGATGAACTGACACTTGTGAGTGTGGTATTGTTCTGAACTAAAGTAGGACTTGATTCTGTTCGTGTGCAACTAGTAGAACAATTGGTGACAGTTGATTTATCTTGAGAAGTAAGTGCACTGGATGAAGAGTTATCATTCATCATTGATTTTGTGGAAGAAGTAACACCTCTGTTCAATGTGCTACACTGTGAAGAGAGAACACTAActgttgattcattttgttGAAGGTCAATATTATTGGTTAAAACAGGTTCACTGCTGGCATGGACTACTGAGCTATCCTCAAGGGGAGTAACAGAATTAAGGGTGCTAACTGTTTTACTGTAAGATGGGGGAGTTGCATCAACACTTTTTCCATGACTTTGAGCTACTTCATTGTCCACCAGAGAAGTGACACTTGTATTTGTTGCCAGATTGGCAGGACTGTGAATTAATTTACTACTTGAACTGACAGAAATGGCTGTAGATGTATTGCATGTTGAAGTAACACTGATGACCACGGGTGTACTTACAGTACTGGTTTTGTGGCTCATATCCTCACTGGCAGAATTCATAAAGTGAATATCTGTTACAGTGGATGAGTGTCCTTGTGCAACATTTGACTGAGATGACGTACTATTTGCTGGCTTTGCAGCAATTCGGCACATGCTTCTCTTCTGATTAGGttcttttctcttcactggTCTGGCCCTTTTAACTGACATCTGTTTGGGTTGGTTTACAGATGCTACACTGGTCTTCTTTGGCAGAATGTTAACTGCACAACTTACTGATGTTGACACGggtacagcagggggtagaacAGTCTCAGTGGATGTACTGACTCCTGAAACTAGCTTGGATAGAGAAGACTGCACTGTAGTGTCTGAAGGTGGAGTAATTTGCAGTTGTACATTGCTCTGATTGGAGACCTGTGAAATGCTTTGACTGGGGATTTGTGAAATGCTCTGGCTAAGGCTAGTGAGGGCACCCAAACAATTCAATGCAACATTGGTGTTAGGTTCCTCACAGGTGGGTTGAATGATTTGCGTAGCATTTTGGCTAACCTGAGAGCTCCCAGTGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395307 lncRNA upstream 37097 17670416 ~ 17670625 (+) True G333791
TU395303 lncRNA upstream 39878 17667636 ~ 17667844 (+) True G333787
TU395113 lncRNA upstream 165961 17540637 ~ 17541761 (+) False rnf6
TU395063 lncRNA upstream 260679 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 344647 17362871 ~ 17363075 (+) True G333548
TU395313 lncRNA downstream 29021 17741401 ~ 17745040 (+) False G333795
TU395312 lncRNA downstream 30898 17743278 ~ 17756282 (+) True G333795
TU395315 lncRNA downstream 43945 17756325 ~ 17756542 (+) True G333797
TU395316 lncRNA downstream 44178 17756558 ~ 17756798 (+) True G333798
TU395317 lncRNA downstream 45344 17757724 ~ 17757929 (+) True G333799
XM_026938144.2 mRNA upstream 1604 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA upstream 1604 17678898 ~ 17706118 (+) False boc
XM_034298053.1 mRNA upstream 54109 17636383 ~ 17653613 (+) False LOC113541191
XM_034298051.1 mRNA upstream 54109 17636431 ~ 17653613 (+) False LOC113541191
XM_034298054.1 mRNA upstream 54109 17636431 ~ 17653613 (+) False LOC113541191
XM_026938142.2 mRNA downstream 15473 17727853 ~ 17739585 (+) True atp6v1ab
XM_026937954.2 mRNA downstream 49151 17761531 ~ 17782411 (+) True pan3
XM_026938160.2 mRNA downstream 230048 17942428 ~ 17951626 (+) True chodl
XM_034298173.1 mRNA downstream 248608 17960988 ~ 17963471 (+) True zgc:112408
XM_026938188.2 mRNA downstream 260824 17973204 ~ 17983420 (+) True lipib
TU394792 other upstream 405718 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 406025 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 407711 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 407711 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 412668 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 274382 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 602976 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 602978 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 602980 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 603303 18315683 ~ 18323295 (+) True mtfr1

Expression Profile