RNA id: TU395303


Basic Information

Item Value
RNA id TU395303
length 209
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G333787
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17667636 ~ 17667844 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaataaacaggcCGGCGTGCAGGAAGAGCTGCTGCTACTGGAGCACAACACAATATTtacactacaatacacactcttctctctgccacttacacacacacacactcacacacacacacagagtaaaggAGGAGAAACTGATGCTTTGTTCTATTTGCTTTCAATGGACATTAAACAAATCTATCATACTTGAGTTGTGACACTTCG

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395113 lncRNA upstream 125875 17540637 ~ 17541761 (+) False rnf6
TU395063 lncRNA upstream 220593 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 304561 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 480961 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 769781 16893006 ~ 16897855 (+) True G333244
TU395307 lncRNA downstream 2572 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 39878 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 73557 17741401 ~ 17745040 (+) False G333795
TU395312 lncRNA downstream 75434 17743278 ~ 17756282 (+) True G333795
TU395315 lncRNA downstream 88481 17756325 ~ 17756542 (+) True G333797
XM_034298053.1 mRNA upstream 14023 17636383 ~ 17653613 (+) False LOC113541191
XM_034298051.1 mRNA upstream 14023 17636431 ~ 17653613 (+) False LOC113541191
XM_034298054.1 mRNA upstream 14023 17636431 ~ 17653613 (+) False LOC113541191
XM_034298052.1 mRNA upstream 14023 17636755 ~ 17653613 (+) True LOC113541191
XM_026938033.2 mRNA upstream 38151 17621946 ~ 17629485 (+) False spice1
XM_026938144.2 mRNA downstream 11054 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA downstream 11054 17678898 ~ 17706118 (+) False boc
XM_026938142.2 mRNA downstream 60009 17727853 ~ 17739585 (+) True atp6v1ab
XM_026937954.2 mRNA downstream 93687 17761531 ~ 17782411 (+) True pan3
XM_026938160.2 mRNA downstream 274584 17942428 ~ 17951626 (+) True chodl
TU394792 other upstream 365632 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 365939 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 367625 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 367625 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 372582 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 318918 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 647512 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 647514 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 647516 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 647839 18315683 ~ 18323295 (+) True mtfr1

Expression Profile