RNA id: TU395307


Basic Information

Item Value
RNA id TU395307
length 210
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G333791
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17670416 ~ 17670625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAGTGCGGATGATAAAACCAGGTGTGCAGATGGAACAGGACTTAGGAGCATGTCAAATCCCTGACATATTTCATTTCTTACCTTCTAAGAGCCAATACCTTCTAATGTCCACCCTAAATCCTCCAGACTGAAGCCTCCCTTCACCCTCCACCCTACAAACCAGACGGCCATACATCATGCAGAGAGACTGCACAGGTCACCCTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395303 lncRNA upstream 2572 17667636 ~ 17667844 (+) True G333787
TU395113 lncRNA upstream 128655 17540637 ~ 17541761 (+) False rnf6
TU395063 lncRNA upstream 223373 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 307341 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 483741 17186129 ~ 17186675 (+) True G333360
TU395294 lncRNA downstream 37097 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 70776 17741401 ~ 17745040 (+) False G333795
TU395312 lncRNA downstream 72653 17743278 ~ 17756282 (+) True G333795
TU395315 lncRNA downstream 85700 17756325 ~ 17756542 (+) True G333797
TU395316 lncRNA downstream 85933 17756558 ~ 17756798 (+) True G333798
XM_034298053.1 mRNA upstream 16803 17636383 ~ 17653613 (+) False LOC113541191
XM_034298051.1 mRNA upstream 16803 17636431 ~ 17653613 (+) False LOC113541191
XM_034298054.1 mRNA upstream 16803 17636431 ~ 17653613 (+) False LOC113541191
XM_034298052.1 mRNA upstream 16803 17636755 ~ 17653613 (+) True LOC113541191
XM_026938032.2 mRNA upstream 40931 17622103 ~ 17629485 (+) True spice1
XM_026938144.2 mRNA downstream 8273 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA downstream 8273 17678898 ~ 17706118 (+) False boc
XM_026938142.2 mRNA downstream 57228 17727853 ~ 17739585 (+) True atp6v1ab
XM_026937954.2 mRNA downstream 90906 17761531 ~ 17782411 (+) True pan3
XM_026938160.2 mRNA downstream 271803 17942428 ~ 17951626 (+) True chodl
TU394792 other upstream 368412 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 368719 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 370405 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 370405 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 375362 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 316137 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 644731 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 644733 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 644735 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 645058 18315683 ~ 18323295 (+) True mtfr1

Expression Profile