Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU395312 |
| length | 840 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 3 |
| gene id | G333795 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 17741401 ~ 17756282 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0034587 | piRNA metabolic process | biological_process |
| id | description |
|---|---|
| ko04113 | Meiosis - yeast |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU395294 | lncRNA | upstream | 30898 | 17707722 ~ 17712380 (+) | True | G333779 |
| TU395307 | lncRNA | upstream | 72653 | 17670416 ~ 17670625 (+) | True | G333791 |
| TU395303 | lncRNA | upstream | 75434 | 17667636 ~ 17667844 (+) | True | G333787 |
| TU395113 | lncRNA | upstream | 201517 | 17540637 ~ 17541761 (+) | False | rnf6 |
| TU395063 | lncRNA | upstream | 296235 | 17446185 ~ 17447043 (+) | True | G333582 |
| TU395315 | lncRNA | downstream | 43 | 17756325 ~ 17756542 (+) | True | G333797 |
| TU395316 | lncRNA | downstream | 276 | 17756558 ~ 17756798 (+) | True | G333798 |
| TU395317 | lncRNA | downstream | 1442 | 17757724 ~ 17757929 (+) | True | G333799 |
| TU395319 | lncRNA | downstream | 25538 | 17781820 ~ 17796521 (+) | False | pan3 |
| TU395321 | lncRNA | downstream | 93513 | 17849795 ~ 17850795 (+) | True | G333801 |
| XM_026938142.2 | mRNA | upstream | 3693 | 17727853 ~ 17739585 (+) | True | atp6v1ab |
| XM_026938144.2 | mRNA | upstream | 37160 | 17678898 ~ 17706118 (+) | True | boc |
| XM_026938146.2 | mRNA | upstream | 37160 | 17678898 ~ 17706118 (+) | False | boc |
| XM_034298054.1 | mRNA | upstream | 89665 | 17636431 ~ 17653613 (+) | False | LOC113541191 |
| XM_026937954.2 | mRNA | downstream | 5249 | 17761531 ~ 17782411 (+) | True | pan3 |
| XM_026938160.2 | mRNA | downstream | 186146 | 17942428 ~ 17951626 (+) | True | chodl |
| XM_034298173.1 | mRNA | downstream | 204706 | 17960988 ~ 17963471 (+) | True | zgc:112408 |
| XM_026938188.2 | mRNA | downstream | 216922 | 17973204 ~ 17983420 (+) | True | lipib |
| XM_026938136.2 | mRNA | downstream | 331365 | 18087647 ~ 18097915 (+) | True | ythdf3 |
| TU394792 | other | upstream | 441274 | 17287160 ~ 17302004 (+) | False | G333388 |
| TU394795 | other | upstream | 441581 | 17292031 ~ 17301697 (+) | False | G333388 |
| TU394798 | other | upstream | 443267 | 17285082 ~ 17300011 (+) | True | G333388 |
| TU394801 | other | upstream | 443267 | 17287160 ~ 17300011 (+) | False | G333388 |
| TU394797 | other | upstream | 448224 | 17287160 ~ 17295054 (+) | False | G333388 |
| TU395491 | other | downstream | 230480 | 17986762 ~ 17993014 (+) | True | G333943 |
| XR_004576961.1 | other | downstream | 559074 | 18315356 ~ 18323295 (+) | False | mtfr1 |
| XR_004576962.1 | other | downstream | 559076 | 18315358 ~ 18323295 (+) | False | mtfr1 |
| XR_004576959.1 | other | downstream | 559078 | 18315360 ~ 18323295 (+) | False | mtfr1 |
| XR_004576960.1 | other | downstream | 559401 | 18315683 ~ 18323295 (+) | True | mtfr1 |
