RNA id: TU395313


Basic Information

Item Value
RNA id TU395313
length 377
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G333795
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17741401 ~ 17756282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaatttcctgaagatcatgggaagatgAAAATGTGGCAGGACGAATCTGACACCGATGACTGATGTGCTTCTTCTTTTACTATTTCATGAGGTTCTGAGGTCACTGGAGCATTTTGGTACACTGAGTCACCGCTTTTCTGCCCTTGGATATTATAGTAGAGCTGCAGGAACACATCAAACCCATCAGTGGCATTAGGAGAAAAGATAAATTTCACTGCAAACCCAGAGAGAAGATCTCCCAGAGCAGGATGCCATAGGCCCAGACGTCACTCTCCATGGTGTACATCCCTTTAAAAATACTCTCCGGGGCCATCCACTTCACTGGTAATCGAGCCTTTAATGAACAAAGTAAAAGTGAGAATTAAGTGAAAGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395294 lncRNA upstream 29021 17707722 ~ 17712380 (+) True G333779
TU395307 lncRNA upstream 70776 17670416 ~ 17670625 (+) True G333791
TU395303 lncRNA upstream 73557 17667636 ~ 17667844 (+) True G333787
TU395113 lncRNA upstream 199640 17540637 ~ 17541761 (+) False rnf6
TU395063 lncRNA upstream 294358 17446185 ~ 17447043 (+) True G333582
TU395315 lncRNA downstream 11285 17756325 ~ 17756542 (+) True G333797
TU395316 lncRNA downstream 11518 17756558 ~ 17756798 (+) True G333798
TU395317 lncRNA downstream 12684 17757724 ~ 17757929 (+) True G333799
TU395319 lncRNA downstream 36780 17781820 ~ 17796521 (+) False pan3
TU395321 lncRNA downstream 104755 17849795 ~ 17850795 (+) True G333801
XM_026938142.2 mRNA upstream 1816 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938144.2 mRNA upstream 35283 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA upstream 35283 17678898 ~ 17706118 (+) False boc
XM_034298051.1 mRNA upstream 87788 17636431 ~ 17653613 (+) False LOC113541191
XM_026937954.2 mRNA downstream 16491 17761531 ~ 17782411 (+) True pan3
XM_026938160.2 mRNA downstream 197388 17942428 ~ 17951626 (+) True chodl
XM_034298173.1 mRNA downstream 215948 17960988 ~ 17963471 (+) True zgc:112408
XM_026938188.2 mRNA downstream 228164 17973204 ~ 17983420 (+) True lipib
XM_026938136.2 mRNA downstream 342607 18087647 ~ 18097915 (+) True ythdf3
TU394792 other upstream 439397 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 439704 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 441390 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 441390 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 446347 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 241722 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 570316 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 570318 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 570320 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 570643 18315683 ~ 18323295 (+) True mtfr1

Expression Profile